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Characterizing endogenous protein complexes with biological mass spectrometry
R Rogawski, M Sharon - Chemical reviews, 2021 - ACS Publications
Biological mass spectrometry (MS) encompasses a range of methods for characterizing
proteins and other biomolecules. MS is uniquely powerful for the structural analysis of …
proteins and other biomolecules. MS is uniquely powerful for the structural analysis of …
Subcellular proteomics
The eukaryotic cell is compartmentalized into subcellular niches, including membrane-
bound and membrane-less organelles. Proteins localize to these niches to fulfil their …
bound and membrane-less organelles. Proteins localize to these niches to fulfil their …
Biological mass spectrometry enables spatiotemporal 'omics: From tissues to cells to organelles
LR Pade, KE Stepler, EP Portero… - Mass spectrometry …, 2024 - Wiley Online Library
Biological processes unfold across broad spatial and temporal dimensions, and
measurement of the underlying molecular world is essential to their understanding …
measurement of the underlying molecular world is essential to their understanding …
Opportunities and Challenges in Global Quantification of RNA-Protein Interaction via UV Cross-Linking
CH Vieira-Vieira, M Selbach - Frontiers in molecular biosciences, 2021 - frontiersin.org
RNA-binding proteins (RBPs) are key mediators of posttranscriptional gene expression
control. However, the links between cell signaling on the one hand and RBP function on the …
control. However, the links between cell signaling on the one hand and RBP function on the …
[HTML][HTML] Proteome-wide quantitative RNA-interactome capture identifies phosphorylation sites with regulatory potential in RBM20
CH Vieira-Vieira, V Dauksaite, A Sporbert, M Gotthardt… - Molecular Cell, 2022 - cell.com
Cellular mRNA-binding proteins (mRBPs) are major posttranscriptional regulators of gene
expression. Although many posttranslational modification sites in mRBPs have been …
expression. Although many posttranslational modification sites in mRBPs have been …
Transcription factor movement and exercise-induced mitochondrial biogenesis in human skeletal muscle: Current knowledge and future perspectives
DF Taylor, DJ Bishop - International Journal of Molecular Sciences, 2022 - mdpi.com
In response to exercise, the oxidative capacity of mitochondria within skeletal muscle
increases through the coordinated expression of mitochondrial proteins in a process termed …
increases through the coordinated expression of mitochondrial proteins in a process termed …
Mass spectrometry methods for analysis of extracellular matrix components in neurological diseases
The brain extracellular matrix (ECM) is a highly glycosylated environment and plays
important roles in many processes including cell communication, growth factor binding, and …
important roles in many processes including cell communication, growth factor binding, and …
Optimized workflow for enrichment and identification of biotinylated peptides using Tamavidin 2-REV for BioID and cell surface proteomics
K Nishino, H Yoshikawa, K Motani… - Journal of Proteome …, 2022 - ACS Publications
Chemical or enzymatic biotinylation of proteins is widely used in various studies, and
proximity-dependent biotinylation coupled to mass spectrometry is a powerful approach for …
proximity-dependent biotinylation coupled to mass spectrometry is a powerful approach for …
[HTML][HTML] Subcellular transcriptomics and proteomics: a comparative methods review
JA Christopher, A Geladaki, CS Dawson… - Molecular & Cellular …, 2022 - Elsevier
The internal environment of cells is molecularly crowded, which requires spatial
organization via subcellular compartmentalization. These compartments harbor specific …
organization via subcellular compartmentalization. These compartments harbor specific …
Protein subcellular localization prediction
E Barberis, E Marengo, M Manfredi - Proteomics Data Analysis, 2021 - Springer
The elucidation of the subcellular localization of proteins is very important in order to deeply
understand their functions. In fact, proteins activities are strictly correlated to the cellular …
understand their functions. In fact, proteins activities are strictly correlated to the cellular …