Characterizing endogenous protein complexes with biological mass spectrometry

R Rogawski, M Sharon - Chemical reviews, 2021 - ACS Publications
Biological mass spectrometry (MS) encompasses a range of methods for characterizing
proteins and other biomolecules. MS is uniquely powerful for the structural analysis of …

Subcellular proteomics

JA Christopher, C Stadler, CE Martin… - Nature Reviews …, 2021 - nature.com
The eukaryotic cell is compartmentalized into subcellular niches, including membrane-
bound and membrane-less organelles. Proteins localize to these niches to fulfil their …

Biological mass spectrometry enables spatiotemporal 'omics: From tissues to cells to organelles

LR Pade, KE Stepler, EP Portero… - Mass spectrometry …, 2024 - Wiley Online Library
Biological processes unfold across broad spatial and temporal dimensions, and
measurement of the underlying molecular world is essential to their understanding …

Opportunities and Challenges in Global Quantification of RNA-Protein Interaction via UV Cross-Linking

CH Vieira-Vieira, M Selbach - Frontiers in molecular biosciences, 2021 - frontiersin.org
RNA-binding proteins (RBPs) are key mediators of posttranscriptional gene expression
control. However, the links between cell signaling on the one hand and RBP function on the …

[HTML][HTML] Proteome-wide quantitative RNA-interactome capture identifies phosphorylation sites with regulatory potential in RBM20

CH Vieira-Vieira, V Dauksaite, A Sporbert, M Gotthardt… - Molecular Cell, 2022 - cell.com
Cellular mRNA-binding proteins (mRBPs) are major posttranscriptional regulators of gene
expression. Although many posttranslational modification sites in mRBPs have been …

Transcription factor movement and exercise-induced mitochondrial biogenesis in human skeletal muscle: Current knowledge and future perspectives

DF Taylor, DJ Bishop - International Journal of Molecular Sciences, 2022 - mdpi.com
In response to exercise, the oxidative capacity of mitochondria within skeletal muscle
increases through the coordinated expression of mitochondrial proteins in a process termed …

Mass spectrometry methods for analysis of extracellular matrix components in neurological diseases

M Downs, J Zaia, MK Sethi - Mass spectrometry reviews, 2023 - Wiley Online Library
The brain extracellular matrix (ECM) is a highly glycosylated environment and plays
important roles in many processes including cell communication, growth factor binding, and …

Optimized workflow for enrichment and identification of biotinylated peptides using Tamavidin 2-REV for BioID and cell surface proteomics

K Nishino, H Yoshikawa, K Motani… - Journal of Proteome …, 2022 - ACS Publications
Chemical or enzymatic biotinylation of proteins is widely used in various studies, and
proximity-dependent biotinylation coupled to mass spectrometry is a powerful approach for …

[HTML][HTML] Subcellular transcriptomics and proteomics: a comparative methods review

JA Christopher, A Geladaki, CS Dawson… - Molecular & Cellular …, 2022 - Elsevier
The internal environment of cells is molecularly crowded, which requires spatial
organization via subcellular compartmentalization. These compartments harbor specific …

Protein subcellular localization prediction

E Barberis, E Marengo, M Manfredi - Proteomics Data Analysis, 2021 - Springer
The elucidation of the subcellular localization of proteins is very important in order to deeply
understand their functions. In fact, proteins activities are strictly correlated to the cellular …