Building pan-genome infrastructures for crop plants and their use in association genetics

M Jayakodi, M Schreiber, N Stein, M Mascher - DNA Research, 2021 - academic.oup.com
Pan-genomic studies aim at representing the entire sequence diversity within a species to
provide useful resources for evolutionary studies, functional genomics and breeding of …

Genome editing in cereal crops: an overview

JM Matres, J Hilscher, A Datta, V Armario-Nájera… - Transgenic …, 2021 - Springer
Genome-editing technologies offer unprecedented opportunities for crop improvement with
superior precision and speed. This review presents an analysis of the current state of …

The barley pan-genome reveals the hidden legacy of mutation breeding

M Jayakodi, S Padmarasu, G Haberer, VS Bonthala… - Nature, 2020 - nature.com
Genetic diversity is key to crop improvement. Owing to pervasive genomic structural
variation, a single reference genome assembly cannot capture the full complement of …

Nutrient regulation of lipochitooligosaccharide recognition in plants via NSP1 and NSP2

XR Li, J Sun, D Albinsky, D Zarrabian, R Hull… - Nature …, 2022 - nature.com
Many plants associate with arbuscular mycorrhizal fungi for nutrient acquisition, while
legumes also associate with nitrogen-fixing rhizobial bacteria. Both associations rely on …

The treasure inside barley seeds: microbial diversity and plant beneficial bacteria

N Bziuk, L Maccario, B Straube, G Wehner… - Environmental …, 2021 - Springer
Background Bacteria associated with plants can enhance the plants' growth and resistance
against phytopathogens. Today, growers aim to reduce the use of mineral fertilizers and …

The barley immune receptor Mla recognizes multiple pathogens and contributes to host range dynamics

J Bettgenhaeuser, I Hernández-Pinzón… - Nature …, 2021 - nature.com
Crop losses caused by plant pathogens are a primary threat to stable food production. Stripe
rust (Puccinia striiformis) is a fungal pathogen of cereal crops that causes significant …

Strain-specific genome evolution in Trypanosoma cruzi, the agent of Chagas disease

W Wang, D Peng, RP Baptista, Y Li, JC Kissinger… - PLoS …, 2021 - journals.plos.org
The protozoan Trypanosoma cruzi almost invariably establishes life-long infections in
humans and other mammals, despite the development of potent host immune responses …

Triticeae crop genome biology: an endless frontier

Z Gao, J Bian, F Lu, Y Jiao, H He - Frontiers in Plant Science, 2023 - frontiersin.org
Triticeae, the wheatgrass tribe, includes several major cereal crops and their wild relatives.
Major crops within the Triticeae are wheat, barley and rye which are important for human …

Multilayered regulation of developmentally programmed pre-anthesis tip degeneration of the barley inflorescence

N Shanmugaraj, J Rajaraman, S Kale, R Kamal… - The Plant …, 2023 - academic.oup.com
Leaf and floral tissue degeneration is a common feature in plants. In cereal crops such as
barley (Hordeum vulgare L.), pre-anthesis tip degeneration (PTD) starts with growth arrest of …

What Are We Learning from Plant Pangenomes?

M Jayakodi, H Shim, M Mascher - Annual Review of Plant …, 2024 - annualreviews.org
A single reference genome does not fully capture species diversity. By contrast, a
pangenome incorporates multiple genomes to capture the entire set of nonredundant genes …