[HTML][HTML] Structural analysis of macromolecular assemblies by electron microscopy

EV Orlova, HR Saibil - Chemical reviews, 2011 - ACS Publications
To fully understand biological processes from the metabolism of a bacterium to the operation
of a human brain, it is necessary to know the three-dimensional (3D) spatial arrangement …

Computational methods for electron tomography

JJ Fernandez - Micron, 2012 - Elsevier
Electron tomography (ET) has emerged as a powerful technique to address fundamental
questions in molecular and cellular biology. It makes possible visualization of the molecular …

Planar-adaptive routing: Low-cost adaptive networks for multiprocessors

AA Chien, JH Kim - ACM SIGARCH Computer Architecture News, 1992 - dl.acm.org
Network throughput can be increased by allowing multipath, adaptive routing. Adaptive
routing allows more freedom in the paths taken by messages, spreading load over physical …

Accurate marker-free alignment with simultaneous geometry determination and reconstruction of tilt series in electron tomography

H Winkler, KA Taylor - Ultramicroscopy, 2006 - Elsevier
An image alignment method for electron tomography is presented which is based on cross-
correlation techniques and which includes a simultaneous refinement of the tilt geometry. A …

Reliable automatic alignment of tomographic projection data by passive auto‐focus

A Kingston, A Sakellariou, T Varslot, G Myers… - Medical …, 2011 - Wiley Online Library
Purpose: The authors present a robust algorithm that removes the blurring and double‐edge
artifacts in high‐resolution computed tomography (CT) images that are caused by …

Markov random field based automatic image alignment for electron tomography

F Amat, F Moussavi, LR Comolli, G Elidan… - Journal of structural …, 2008 - Elsevier
We present a method for automatic full-precision alignment of the images in a tomographic
tilt series. Full-precision automatic alignment of cryo electron microscopy images has …

Rapid alignment of nanotomography data using joint iterative reconstruction and reprojection

D Gürsoy, YP Hong, K He, K Hujsak, S Yoo, S Chen… - Scientific reports, 2017 - nature.com
As x-ray and electron tomography is pushed further into the nanoscale, the limitations of
rotation stages become more apparent, leading to challenges in the alignment of the …

Marker-free image registration of electron tomography tilt-series

COS Sorzano, C Messaoudi, M Eibauer… - BMC …, 2009 - Springer
Background Tilt series are commonly used in electron tomography as a means of collecting
three-dimensional information from two-dimensional projections. A common problem …

Subtomogram averaging from cryo-electron tomograms

KE Leigh, PP Navarro, S Scaramuzza, W Chen… - Methods in cell …, 2019 - Elsevier
Cryo-electron tomography (cryo-ET) allows three-dimensional (3D) visualization of frozen-
hydrated biological samples, such as protein complexes and cell organelles, in near-native …

Transform-based backprojection for volume reconstruction of large format electron microscope tilt series

A Lawrence, JC Bouwer, G Perkins… - Journal of structural …, 2006 - Elsevier
Alignment of the individual images of a tilt series is a critical step in obtaining high-quality
electron microscope reconstructions. We report on general methods for producing good …