[HTML][HTML] Graph neural networks: A review of methods and applications
Lots of learning tasks require dealing with graph data which contains rich relation
information among elements. Modeling physics systems, learning molecular fingerprints …
information among elements. Modeling physics systems, learning molecular fingerprints …
E (n) equivariant graph neural networks
This paper introduces a new model to learn graph neural networks equivariant to rotations,
translations, reflections and permutations called E (n)-Equivariant Graph Neural Networks …
translations, reflections and permutations called E (n)-Equivariant Graph Neural Networks …
A review on the recent applications of deep learning in predictive drug toxicological studies
Drug toxicity prediction is an important step in ensuring patient safety during drug design
studies. While traditional preclinical studies have historically relied on animal models to …
studies. While traditional preclinical studies have historically relied on animal models to …
Training graph neural networks with 1000 layers
Deep graph neural networks (GNNs) have achieved excellent results on various tasks on
increasingly large graph datasets with millions of nodes and edges. However, memory …
increasingly large graph datasets with millions of nodes and edges. However, memory …
Graphaf: a flow-based autoregressive model for molecular graph generation
Molecular graph generation is a fundamental problem for drug discovery and has been
attracting growing attention. The problem is challenging since it requires not only generating …
attracting growing attention. The problem is challenging since it requires not only generating …
On the binding problem in artificial neural networks
Contemporary neural networks still fall short of human-level generalization, which extends
far beyond our direct experiences. In this paper, we argue that the underlying cause for this …
far beyond our direct experiences. In this paper, we argue that the underlying cause for this …
Graph neural ordinary differential equations
We introduce the framework of continuous--depth graph neural networks (GNNs). Graph
neural ordinary differential equations (GDEs) are formalized as the counterpart to GNNs …
neural ordinary differential equations (GDEs) are formalized as the counterpart to GNNs …
E (n) equivariant normalizing flows
This paper introduces a generative model equivariant to Euclidean symmetries: E (n)
Equivariant Normalizing Flows (E-NFs). To construct E-NFs, we take the discriminative E (n) …
Equivariant Normalizing Flows (E-NFs). To construct E-NFs, we take the discriminative E (n) …
Graphdf: A discrete flow model for molecular graph generation
We consider the problem of molecular graph generation using deep models. While graphs
are discrete, most existing methods use continuous latent variables, resulting in inaccurate …
are discrete, most existing methods use continuous latent variables, resulting in inaccurate …
Moflow: an invertible flow model for generating molecular graphs
Generating molecular graphs with desired chemical properties driven by deep graph
generative models provides a very promising way to accelerate drug discovery process …
generative models provides a very promising way to accelerate drug discovery process …