Computational modeling, formal analysis, and tools for systems biology

E Bartocci, P Lió - PLoS computational biology, 2016 - journals.plos.org
As the amount of biological data in the public domain grows, so does the range of modeling
and analysis techniques employed in systems biology. In recent years, a number of …

Specification-based monitoring of cyber-physical systems: a survey on theory, tools and applications

E Bartocci, J Deshmukh, A Donzé, G Fainekos… - Lectures on Runtime …, 2018 - Springer
Abstract The term Cyber-Physical Systems (CPS) typically refers to engineered, physical
and biological systems monitored and/or controlled by an embedded computational core …

A survey of challenges for runtime verification from advanced application domains (beyond software)

C Sánchez, G Schneider, W Ahrendt, E Bartocci… - Formal Methods in …, 2019 - Springer
Runtime verification is an area of formal methods that studies the dynamic analysis of
execution traces against formal specifications. Typically, the two main activities in runtime …

Data-driven statistical learning of temporal logic properties

E Bartocci, L Bortolussi, G Sanguinetti - … on formal modeling and analysis of …, 2014 - Springer
We present a novel approach to learn logical formulae characterising the emergent
behaviour of a dynamical system from system observations. At a high level, the approach …

A novel spatial–temporal specification-based monitoring system for smart cities

M Ma, E Bartocci, E Lifland… - IEEE Internet of …, 2021 - ieeexplore.ieee.org
With the development of the Internet of Things, millions of sensors are being deployed in
cities to collect real-time data. This leads to a need for checking city states against city …

The national library of medicine pill image recognition challenge: An initial report

Z Yaniv, J Faruque, S Howe, K Dunn… - 2016 IEEE Applied …, 2016 - ieeexplore.ieee.org
In January 2016 the US National Library of Medicine announced a challenge competition
calling for the development and discovery of high-quality algorithms and software that rank …

[HTML][HTML] Quantitative verification of implantable cardiac pacemakers over hybrid heart models

T Chen, M Diciolla, M Kwiatkowska… - Information and …, 2014 - Elsevier
We develop a model-based framework which supports approximate quantitative verification
of implantable cardiac pacemaker models over hybrid heart models. The framework is …

Abstraction-based parameter synthesis for multiaffine systems

S Bogomolov, C Schilling, E Bartocci, G Batt… - Hardware and Software …, 2015 - Springer
Multiaffine hybrid automata (MHA) represent a powerful formalism to model complex
dynamical systems. This formalism is particularly suited for the representation of biological …

Autonomy verification & validation roadmap and vision 2045

GP Brat, H Yu, E Atkins, P Sharma, D Cofer, M Durling… - 2023 - ntrs.nasa.gov
Advanced capabilities planned for the next generation of autonomous and increasingly
autonomous air vehicles will include non-traditional components based on artificial …

Invariant verification of nonlinear hybrid automata networks of cardiac cells

Z Huang, C Fan, A Mereacre, S Mitra… - … on Computer Aided …, 2014 - Springer
Verification algorithms for networks of nonlinear hybrid automata (HA) can aid us
understand and control biological processes such as cardiac arrhythmia, formation of …