Patterns and processes of diploidization in land plants

Z Li, MTW McKibben, GS Finch… - Annual review of …, 2021 - annualreviews.org
Most land plants are now known to be ancient polyploids that have rediploidized.
Diploidization involves many changes in genome organization that ultimately restore …

Post-polyploid diploidization and diversification through dysploid changes

T Mandáková, MA Lysak - Current opinion in plant biology, 2018 - Elsevier
Highlights•Post-polyploid diploidization (PPD) in angiosperms usually operates by
descending dysploidy.•PPD is acting with differing intensities and rates.•Multiple base …

De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes

MB Hufford, AS Seetharam, MR Woodhouse… - Science, 2021 - science.org
We report de novo genome assemblies, transcriptomes, annotations, and methylomes for
the 26 inbreds that serve as the founders for the maize nested association map** …

Repeat-based holocentromeres influence genome architecture and karyotype evolution

PG Hofstatter, G Thangavel, T Lux, P Neumann… - Cell, 2022 - cell.com
The centromere represents a single region in most eukaryotic chromosomes. However,
several plant and animal lineages assemble holocentromeres along the entire chromosome …

Resolution of Brassicaceae phylogeny using nuclear genes uncovers nested radiations and supports convergent morphological evolution

CH Huang, R Sun, Y Hu, L Zeng… - Molecular biology …, 2016 - academic.oup.com
Brassicaceae is one of the most diverse and economically valuable angiosperm families
with widely cultivated vegetable crops and scientifically important model plants, such as …

The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure

S Kagale, C Koh, J Nixon, V Bollina, WE Clarke… - Nature …, 2014 - nature.com
Camelina sativa is an oilseed with desirable agronomic and oil-quality attributes for a viable
industrial oil platform crop. Here we generate the first chromosome-scale high-quality …

A time-calibrated road map of Brassicaceae species radiation and evolutionary history

N Hohmann, EM Wolf, MA Lysak, MA Koch - The Plant Cell, 2015 - academic.oup.com
The Brassicaceae include several major crop plants and numerous important model species
in comparative evolutionary research such as Arabidopsis, Brassica, Boechera …

Cabbage family affairs: the evolutionary history of Brassicaceae

A Franzke, MA Lysak, IA Al-Shehbaz, MA Koch… - Trends in plant …, 2011 - cell.com
Life without the mustard family (Brassicaceae) would be a world without many crop species
and the model organism Arabidopsis (Arabidopsis thaliana) that has revolutionized our …

Interpretation of karyotype evolution should consider chromosome structural constraints

I Schubert, MA Lysak - Trends in Genetics, 2011 - cell.com
Comparative genetics, genomics and cytogenetics provide tools to trace the evolutionary
history of extant genomes. Yet, the interpretation of rapidly increasing genomic data is not …

Chromosome-Specific Painting in Cucumis Species Using Bulked Oligonucleotides

Y Han, T Zhang, P Thammapichai, Y Weng, J Jiang - Genetics, 2015 - academic.oup.com
Chromosome-specific painting is a powerful technique in molecular cytogenetic and
genome research. We developed an oligonucleotide (oligo)-based chromosome painting …