Nanotechnology to advance CRISPR–Cas genetic engineering of plants

GS Demirer, TN Silva, CT Jackson, JB Thomas… - Nature …, 2021 - nature.com
CRISPR–Cas genetic engineering of plants holds tremendous potential for providing food
security, battling biotic and abiotic crop stresses caused by climate change, and for …

Learning from co-expression networks: possibilities and challenges

EAR Serin, H Nijveen, HWM Hilhorst… - Frontiers in plant …, 2016 - frontiersin.org
Plants are fascinating and complex organisms. A comprehensive understanding of the
organization, function and evolution of plant genes is essential to disentangle important …

agriGO v2. 0: a GO analysis toolkit for the agricultural community, 2017 update

T Tian, Y Liu, H Yan, Q You, X Yi, Z Du… - Nucleic acids …, 2017 - academic.oup.com
The agriGO platform, which has been serving the scientific community for> 10 years,
specifically focuses on gene ontology (GO) enrichment analyses of plant and agricultural …

Plant Metabolic Network 15: A resource of genome‐wide metabolism databases for 126 plants and algae

C Hawkins, D Ginzburg, K Zhao… - Journal of integrative …, 2021 - Wiley Online Library
To understand and engineer plant metabolism, we need a comprehensive and accurate
annotation of all metabolic information across plant species. As a step towards this goal, we …

[HTML][HTML] MapMan4: a refined protein classification and annotation framework applicable to multi-omics data analysis

R Schwacke, GY Ponce-Soto, K Krause, AM Bolger… - Molecular plant, 2019 - cell.com
Genome sequences from over 200 plant species have already been published, with this
number expected to increase rapidly due to advances in sequencing technologies. Once a …

JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom

A Sreedasyam, C Plott, MS Hossain… - Nucleic acids …, 2023 - academic.oup.com
Gene functional descriptions offer a crucial line of evidence for candidate genes underlying
trait variation. Conversely, plant responses to environmental cues represent important …

A pan-plant protein complex map reveals deep conservation and novel assemblies

CD McWhite, O Papoulas, K Drew, RM Cox, V June… - Cell, 2020 - cell.com
Plants are foundational for global ecological and economic systems, but most plant proteins
remain uncharacterized. Protein interaction networks often suggest protein functions and …

[HTML][HTML] Current progress and challenges in crop genetic transformation

RB Anjanappa, W Gruissem - Journal of Plant Physiology, 2021 - Elsevier
Plant transformation remains the most sought-after technology for functional genomics and
crop genetic improvement, especially for introducing specific new traits and to modify or …

Crossroads in the evolution of plant specialized metabolism

TP Rieseberg, A Dadras, JMR Fürst-Jansen… - Seminars in Cell & …, 2023 - Elsevier
The monophyletic group of embryophytes (land plants) stands out among photosynthetic
eukaryotes: they are the sole constituents of the macroscopic flora on land. In their entirety …

Proximity labeling in plants

SL Xu, R Shrestha, SS Karunadasa… - Annual review of plant …, 2023 - annualreviews.org
Proteins are workhorses in the cell; they form stable and more often dynamic, transient
protein–protein interactions, assemblies, and networks and have an intimate interplay with …