Cytokine-mediated communication: a quantitative appraisal of immune complexity
G Altan-Bonnet, R Mukherjee - Nature Reviews Immunology, 2019 - nature.com
Intercellular communication mediated by cytokines is the main mechanism by which cells of
the immune system talk to each other. Many aspects of cytokine signalling in the immune …
the immune system talk to each other. Many aspects of cytokine signalling in the immune …
Metabolic interaction models recapitulate leaf microbiota ecology
Resource allocation affects the structure of microbiomes, including those associated with
living hosts. Understanding the degree to which this dependency determines interspecies …
living hosts. Understanding the degree to which this dependency determines interspecies …
Designing More Informative Multiple-Driver Experiments
For decades, multiple-driver/stressor research has examined interactions among drivers that
will undergo large changes in the future: temperature, pH, nutrients, oxygen, pathogens, and …
will undergo large changes in the future: temperature, pH, nutrients, oxygen, pathogens, and …
From competition to facilitation and mutualism: a general theory of the niche
Niche Theory is a central framework in ecology based on the recognition that most
interactions between organisms are indirect, mediated by the biotic and abiotic dynamical …
interactions between organisms are indirect, mediated by the biotic and abiotic dynamical …
Diversity begets stability: Sublinear growth and competitive coexistence across ecosystems
The worldwide loss of species diversity brings urgency to understanding how diverse
ecosystems maintain stability. Whereas early ecological ideas and classic observations …
ecosystems maintain stability. Whereas early ecological ideas and classic observations …
Engineering complex communities by directed evolution
Directed evolution has been used for decades to engineer biological systems at or below
the organismal level. Above the organismal level, a small number of studies have attempted …
the organismal level. Above the organismal level, a small number of studies have attempted …
Stabilization of extensive fine-scale diversity by ecologically driven spatiotemporal chaos
It has recently become apparent that the diversity of microbial life extends far below the
species level to the finest scales of genetic differences. Remarkably, extensive fine-scale …
species level to the finest scales of genetic differences. Remarkably, extensive fine-scale …
Available energy fluxes drive a transition in the diversity, stability, and functional structure of microbial communities
A fundamental goal of microbial ecology is to understand what determines the diversity,
stability, and structure of microbial ecosystems. The microbial context poses special …
stability, and structure of microbial ecosystems. The microbial context poses special …
Non-additive microbial community responses to environmental complexity
Environmental composition is a major, though poorly understood, determinant of
microbiome dynamics. Here we ask whether general principles govern how microbial …
microbiome dynamics. Here we ask whether general principles govern how microbial …
Memorizing without overfitting: Bias, variance, and interpolation in overparameterized models
The bias-variance trade-off is a central concept in supervised learning. In classical statistics,
increasing the complexity of a model (eg, number of parameters) reduces bias but also …
increasing the complexity of a model (eg, number of parameters) reduces bias but also …