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Spaces, trees, and colors: The algorithmic landscape of document retrieval on sequences
G Navarro - ACM Computing Surveys (CSUR), 2014 - dl.acm.org
Document retrieval is one of the best-established information retrieval activities since
the'60s, pervading all search engines. Its aim is to obtain, from a collection of text …
the'60s, pervading all search engines. Its aim is to obtain, from a collection of text …
[KIRJA][B] Algorithms and theory of computation handbook, volume 2: special topics and techniques
MJ Atallah, M Blanton - 2009 - books.google.com
This handbook provides an up-to-date compendium of fundamental computer science
topics, techniques, and applications. Along with updating and revising many of the existing …
topics, techniques, and applications. Along with updating and revising many of the existing …
[KIRJA][B] Average case analysis of algorithms on sequences
W Szpankowski - 2011 - books.google.com
A timely book on a topic that has witnessed a surge of interest over the last decade, owing in
part to several novel applications, most notably in data compression and computational …
part to several novel applications, most notably in data compression and computational …
[KIRJA][B] Handbook of computational molecular biology
S Aluru - 2005 - taylorfrancis.com
The enormous complexity of biological systems at the molecular level must be answered
with powerful computational methods. Computational biology is a young field, but has seen …
with powerful computational methods. Computational biology is a young field, but has seen …
Fast text searching for regular expressions or automaton searching on tries
We present algorithms for efficient searching of regular expressions on preprocessed text,
using a Patricia tree as a logical model for the index. We obtain searching algorithms that …
using a Patricia tree as a logical model for the index. We obtain searching algorithms that …
[HTML][HTML] Estimating the entropy of binary time series: Methodology, some theory and a simulation study
Y Gao, I Kontoyiannis, E Bienenstock - Entropy, 2008 - mdpi.com
Partly motivated by entropy-estimation problems in neuroscience, we present a detailed and
extensive comparison between some of the most popular and effective entropy estimation …
extensive comparison between some of the most popular and effective entropy estimation …
Faster entropy-bounded compressed suffix trees
Suffix trees are among the most important data structures in stringology, with a number of
applications in flourishing areas like bioinformatics. Their main problem is space usage …
applications in flourishing areas like bioinformatics. Their main problem is space usage …
Asymptotic behavior of the Lempel-Ziv parsing scheme and digital search trees
The Lempel-Ziv parsing scheme finds a wide range of applications, most notably in data
compression and algorithms on words. It partitions a sequence of length n into variable …
compression and algorithms on words. It partitions a sequence of length n into variable …
On the entropy of a hidden Markov process
We study the entropy rate of a hidden Markov process (HMP) defined by observing the
output of a binary symmetric channel whose input is a first-order binary Markov process …
output of a binary symmetric channel whose input is a first-order binary Markov process …
A suboptimal lossy data compression based on approximate pattern matching
A practical suboptimal (variable source coding) algorithm for lossy data compression is
presented. This scheme is based on approximate string matching, and it naturally extends …
presented. This scheme is based on approximate string matching, and it naturally extends …