A compendium of mutational cancer driver genes

F Martínez-Jiménez, F Muiños, I Sentís… - Nature Reviews …, 2020 - nature.com
A fundamental goal in cancer research is to understand the mechanisms of cell
transformation. This is key to develo** more efficient cancer detection methods and …

Advances in post-translational modifications of proteins and cancer immunotherapy

Y Li, R Zhang, H Hei - Frontiers in immunology, 2023 - frontiersin.org
Protein post-translational modification (PTM) is a regulatory mechanism for protein activity
modulation, localization, expression, and interactions with other cellular molecules. It …

Prognostic genome and transcriptome signatures in colorectal cancers

L Nunes, F Li, M Wu, T Luo, K Hammarström, E Torell… - Nature, 2024 - nature.com
Colorectal cancer is caused by a sequence of somatic genomic alterations affecting driver
genes in core cancer pathways. Here, to understand the functional and prognostic impact of …

Epidermal growth factor receptor (EGFR) is a target of the tumor-suppressor E3 ligase FBXW7

M Boretto, MH Geurts, S Gandhi, Z Ma… - Proceedings of the …, 2024 - pnas.org
FBXW7 is an E3 ubiquitin ligase that targets proteins for proteasome-mediated degradation
and is mutated in various cancer types. Here, we use CRISPR base editors to introduce …

In silico saturation mutagenesis of cancer genes

F Muiños, F Martínez-Jiménez, O Pich… - Nature, 2021 - nature.com
Despite the existence of good catalogues of cancer genes,, identifying the specific mutations
of those genes that drive tumorigenesis across tumour types is still a largely unsolved …

Advancing targeted protein degradation via multiomics profiling and artificial intelligence

M Duran-Frigola, M Cigler… - Journal of the American …, 2023 - ACS Publications
Only around 20% of the human proteome is considered to be druggable with small-molecule
antagonists. This leaves some of the most compelling therapeutic targets outside the reach …

Discovering the drivers of clonal hematopoiesis

O Pich, I Reyes-Salazar, A Gonzalez-Perez… - Nature …, 2022 - nature.com
Mutations in genes that confer a selective advantage to hematopoietic stem cells (HSCs)
drive clonal hematopoiesis (CH). While some CH drivers have been identified, the …

Precision medicine in the era of multi-omics: can the data tsunami guide rational treatment decision?

M Aldea, L Friboulet, S Apcher, F Jaulin, F Mosele… - ESMO open, 2023 - Elsevier
Highlights•Actionable alterations should be prioritized by using validated rankings for
treatment tailoring.•High-throughput genomics could refine drivers and find new targets, mini …

[HTML][HTML] Systematic characterization of mutations altering protein degradation in human cancers

C Tokheim, X Wang, RT Timms, B Zhang, EL Mena… - Molecular cell, 2021 - cell.com
The ubiquitin-proteasome system (UPS) is the primary route for selective protein
degradation in human cells. The UPS is an attractive target for novel cancer therapies, but …

[PDF][PDF] DegronMD: leveraging evolutionary and structural features for deciphering protein-targeted degradation, mutations, and drug response to degrons

H Xu, R Hu, Z Zhao - Molecular biology and evolution, 2023 - academic.oup.com
Protein-targeted degradation is an emerging and promising therapeutic approach. The
specificity of degradation and the maintenance of cellular homeostasis are determined by …