Pfam: the protein families database
Pfam, available via servers in the UK (http://pfam. sanger. ac. uk/) and the USA (http://pfam.
janelia. org/), is a widely used database of protein families, containing 14 831 manually …
janelia. org/), is a widely used database of protein families, containing 14 831 manually …
Evolutionary and comparative analysis of MYB and bHLH plant transcription factors
The expansion of gene families encoding regulatory proteins is typically associated with the
increase in complexity characteristic of multi‐cellular organisms. The MYB and basic helix …
increase in complexity characteristic of multi‐cellular organisms. The MYB and basic helix …
Logomaker: beautiful sequence logos in Python
Sequence logos are visually compelling ways of illustrating the biological properties of DNA,
RNA and protein sequences, yet it is currently difficult to generate and customize such logos …
RNA and protein sequences, yet it is currently difficult to generate and customize such logos …
The Pfam protein families database
Pfam is a widely used database of protein families and domains. This article describes a set
of major updates that we have implemented in the latest release (version 24.0). The most …
of major updates that we have implemented in the latest release (version 24.0). The most …
Cellular function and molecular structure of ecto-nucleotidases
Ecto-nucleotidases play a pivotal role in purinergic signal transmission. They hydrolyze
extracellular nucleotides and thus can control their availability at purinergic P2 receptors …
extracellular nucleotides and thus can control their availability at purinergic P2 receptors …
Structure and function of WD40 domain proteins
C Xu, J Min - Protein & cell, 2011 - Springer
The WD40 domain exhibits a β-propeller architecture, often comprising seven blades. The
WD40 domain is one of the most abundant domains and also among the top interacting …
WD40 domain is one of the most abundant domains and also among the top interacting …
Pfam: clans, web tools and services
Pfam is a database of protein families that currently contains 7973 entries (release 18.0). A
recent development in Pfam has enabled the grou** of related families into clans. Pfam …
recent development in Pfam has enabled the grou** of related families into clans. Pfam …
Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models
Background Logos are commonly used in molecular biology to provide a compact graphical
representation of the conservation pattern of a set of sequences. They render the information …
representation of the conservation pattern of a set of sequences. They render the information …
WD40 proteins propel cellular networks
Recent findings indicate that WD40 domains play central roles in biological processes by
acting as hubs in cellular networks; however, they have been studied less intensely than …
acting as hubs in cellular networks; however, they have been studied less intensely than …
Origin and diversification of basic-helix-loop-helix proteins in plants
Basic helix-loop-helix (bHLH) proteins are a class of transcription factors found throughout
eukaryotic organisms. Classification of the complete sets of bHLH proteins in the sequenced …
eukaryotic organisms. Classification of the complete sets of bHLH proteins in the sequenced …