Upcoming progress of transcriptomics studies on plants: An overview

P Tyagi, D Singh, S Mathur, A Singh… - Frontiers in Plant …, 2022 - frontiersin.org
Transcriptome sequencing or RNA-Sequencing is a high-resolution, sensitive and high-
throughput next-generation sequencing (NGS) approach used to study non-model plants …

Phylogenomics and the flowering plant tree of life

C Guo, Y Luo, LM Gao, TS Yi, HT Li… - Journal of Integrative …, 2023 - Wiley Online Library
The advances accelerated by next‐generation sequencing and long‐read sequencing
technologies continue to provide an impetus for plant phylogenetic study. In the past …

TSEBRA: transcript selector for BRAKER

L Gabriel, KJ Hoff, T Brůna, M Borodovsky, M Stanke - BMC bioinformatics, 2021 - Springer
Background BRAKER is a suite of automatic pipelines, BRAKER1 and BRAKER2, for the
accurate annotation of protein-coding genes in eukaryotic genomes. Each pipeline trains …

[HTML][HTML] Most dominant roles of insect gut bacteria: digestion, detoxification, or essential nutrient provision?

TZ **g, FH Qi, ZY Wang - Microbiome, 2020 - Springer
The insect gut microbiota has been shown to contribute to the host's digestion, detoxification,
development, pathogen resistance, and physiology. However, there is poor information …

The flying spider-monkey tree fern genome provides insights into fern evolution and arborescence

X Huang, W Wang, T Gong, D Wickell, LY Kuo… - Nature Plants, 2022 - nature.com
To date, little is known about the evolution of fern genomes, with only two small genomes
published from the heterosporous Salviniales. Here we assembled the genome of Alsophila …

The enormous repetitive Antarctic krill genome reveals environmental adaptations and population insights

C Shao, S Sun, K Liu, J Wang, S Li, Q Liu, BE Deagle… - Cell, 2023 - cell.com
Antarctic krill (Euphausia superba) is Earth's most abundant wild animal, and its enormous
biomass is vital to the Southern Ocean ecosystem. Here, we report a 48.01-Gb chromosome …

Parallel evolution of cannabinoid biosynthesis

P Berman, LA de Haro, A Jozwiak, S Panda, Z Pinkas… - Nature plants, 2023 - nature.com
Modulation of the endocannabinoid system is projected to have therapeutic potential in
almost all human diseases. Accordingly, the high demand for novel cannabinoids stimulates …

Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel

M Gerdol, R Moreira, F Cruz, J Gómez-Garrido… - Genome biology, 2020 - Springer
Abstract Background The Mediterranean mussel Mytilus galloprovincialis is an ecologically
and economically relevant edible marine bivalve, highly invasive and resilient to biotic and …

Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome

DM Bickhart, BD Rosen, S Koren, BL Sayre… - Nature …, 2017 - nature.com
The decrease in sequencing cost and increased sophistication of assembly algorithms for
short-read platforms has resulted in a sharp increase in the number of species with genome …

Polystyrene nanoplastic induces oxidative stress, immune defense, and glycometabolism change in Daphnia pulex: Application of transcriptome profiling in risk …

Z Liu, Y Li, E Pérez, Q Jiang, Q Chen, Y Jiao… - Journal of Hazardous …, 2021 - Elsevier
Aquatic environments are generally contaminated with nanoplastic material. As a result,
molecular mechanisms for sensitive species like Daphnia are needed, given that …