An introduction to phylosymbiosis

SJ Lim, SR Bordenstein - Proceedings of the Royal …, 2020 - royalsocietypublishing.org
Phylosymbiosis was recently formulated to support a hypothesis-driven framework for the
characterization of a new, cross-system trend in host-associated microbiomes. Defining …

The future is now: single-cell genomics of bacteria and archaea

PC Blainey - FEMS microbiology reviews, 2013 - academic.oup.com
Interest in the expanding catalog of uncultivated microorganisms, increasing recognition of
heterogeneity among seemingly similar cells, and technological advances in whole-genome …

[HTML][HTML] Single cell genomics: an individual look at microbes

R Stepanauskas - Current opinion in microbiology, 2012 - Elsevier
Single cell genomics (SCG) uncovers hereditary information at the most basic level of
biological organization. It is emerging as a powerful complement to cultivation-based and …

Metagenomic approaches for exploiting uncultivated bacteria as a resource for novel biosynthetic enzymology

MC Wilson, J Piel - Chemistry & biology, 2013 - cell.com
Most biologically active microbial natural products are known from strains that can be
isolated and cultivated in the laboratory. However, the genomics era has revealed that …

Single-cell genomics reveals complex carbohydrate degradation patterns in poribacterial symbionts of marine sponges

J Kamke, A Sczyrba, N Ivanova, P Schwientek… - The ISME …, 2013 - academic.oup.com
Many marine sponges are hosts to dense and phylogenetically diverse microbial
communities that are located in the extracellular matrix of the animal. The candidate phylum …

Quantification of bacterial and archaeal symbionts in high and low microbial abundance sponges using real-time PCR

K Bayer, J Kamke, U Hentschel - FEMS Microbiology Ecology, 2014 - academic.oup.com
In spite of considerable insights into the microbial diversity of marine sponges, quantitative
information on microbial abundances and community composition remains scarce. Here, we …

The Candidate Phylum Poribacteria by Single-Cell Genomics: New Insights into Phylogeny, Cell-Compartmentation, Eukaryote-Like Repeat Proteins, and Other …

J Kamke, C Rinke, P Schwientek, K Mavromatis… - PloS one, 2014 - journals.plos.org
The candidate phylum Poribacteria is one of the most dominant and widespread members of
the microbial communities residing within marine sponges. Cell compartmentalization had …

[LIBRO][B] Unravelling the soil microbiome: perspectives for environmental sustainability

RK Dubey, V Tripathi, R Prabha, R Chaurasia… - 2020 - Springer
Soil is considered as a complex and dynamic biological system that provides diverse
habitats for the microbial community and is a hotspot for belowground microbial interactions …

Biotechnological Potential of Cold Adapted Pseudoalteromonas spp. Isolated from 'Deep Sea' Sponges

E Borchert, S Knobloch, E Dwyer, S Flynn, SA Jackson… - Marine drugs, 2017 - mdpi.com
The marine genus Pseudoalteromonas is known for its versatile biotechnological potential
with respect to the production of antimicrobials and enzymes of industrial interest. We have …

Testing the reproducibility of multiple displacement amplification on genomes of clonal endosymbiont populations

KM Ellegaard, L Klasson, SGE Andersson - PloS one, 2013 - journals.plos.org
The multiple displacement amplification method has revolutionized genomic studies of
uncultured bacteria, where the extraction of pure DNA in sufficient quantity for next …