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[PDF][PDF] A simple guide to de novo transcriptome assembly and annotation
A transcriptome constructed from short-read RNA sequencing (RNA-seq) is an easily
attainable proxy catalog of protein-coding genes when genome assembly is unnecessary …
attainable proxy catalog of protein-coding genes when genome assembly is unnecessary …
[HTML][HTML] Linking pollution and cancer in aquatic environments: A review
Due to the interconnectedness of aquatic ecosystems through the highly effective marine
and atmospheric transport routes, all aquatic ecosystems are potentially vulnerable to …
and atmospheric transport routes, all aquatic ecosystems are potentially vulnerable to …
[HTML][HTML] Exploring pan-genomes: an overview of resources and tools for unraveling structure, function, and evolution of crop genes and genomes
The availability of multiple sequenced genomes from a single species made it possible to
explore intra-and inter-specific genomic comparisons at higher resolution and build clade …
explore intra-and inter-specific genomic comparisons at higher resolution and build clade …
Ten years of collaborative progress in the quest for orthologs
Accurate determination of the evolutionary relationships between genes is a foundational
challenge in biology. Homology—evolutionary relatedness—is in many cases readily …
challenge in biology. Homology—evolutionary relatedness—is in many cases readily …
Why should we compare morphological and molecular disparity?
C Van Den Ende, MN Puttick… - Methods in Ecology …, 2023 - Wiley Online Library
Indices of morphological disparity seek to summarise the highly multivariate morphological
variation across groups of species within clades, time bins or other groups. Morphological …
variation across groups of species within clades, time bins or other groups. Morphological …
The role of homology and orthology in the phylogenomic analysis of metazoan gene content
Resolving the relationships of animals (Metazoa) is crucial to our understanding of the origin
of key traits such as muscles, guts, and nerves. However, a broadly accepted metazoan …
of key traits such as muscles, guts, and nerves. However, a broadly accepted metazoan …
PlacentaCellEnrich: A tool to characterize gene sets using placenta cell-specific gene enrichment analysis
Abstract Single-cell RNA-Sequencing (scRNA-Seq) has improved our understanding of
individual cell types in the human placenta. However, placental scRNA-Seq data is not …
individual cell types in the human placenta. However, placental scRNA-Seq data is not …
Assembling animals: trees, genomes, cells, and contrast to plants
The Animal Kingdom is an astonishingly diverse group. Together with plants and fungi is
one of the three major lineages of multicellular eukaryotes. Due to anthropocentrism and/or …
one of the three major lineages of multicellular eukaryotes. Due to anthropocentrism and/or …
Wide-scale identification of novel/eliminated genes responsible for evolutionary transformations
Background It is generally accepted that most evolutionary transformations at the phenotype
level are associated either with rearrangements of genomic regulatory elements, which …
level are associated either with rearrangements of genomic regulatory elements, which …
[HTML][HTML] Ancestral sequence reconstruction-An underused approach to understand the evolution of gene function in plants?
Whilst substantial research effort has been placed on understanding the interactions of plant
proteins with their molecular partners, relatively few studies in plants-by contrast to work in …
proteins with their molecular partners, relatively few studies in plants-by contrast to work in …