Microbial structuring of marine ecosystems

F Azam, F Malfatti - Nature Reviews Microbiology, 2007 - nature.com
Despite the impressive advances that have been made in assessing the diversity of marine
microorganisms, the mechanisms that underlie the participation of microorganisms in marine …

Functional single-cell analyses: flow cytometry and cell sorting of microbial populations and communities

S Müller, G Nebe-von-Caron - FEMS Microbiology reviews, 2010 - academic.oup.com
The still poorly explored world of microbial functioning is about to be uncovered by a
combined application of old and new technologies. Bacteria, especially, are still in the dark …

[HTML][HTML] Xenobiotics shape the physiology and gene expression of the active human gut microbiome

CF Maurice, HJ Haiser, PJ Turnbaugh - Cell, 2013 - cell.com
The human gut contains trillions of microorganisms that influence our health by metabolizing
xenobiotics, including host-targeted drugs and antibiotics. Recent efforts have characterized …

Assessment and interpretation of bacterial viability by using the LIVE/DEAD BacLight Kit in combination with flow cytometry

M Berney, F Hammes, F Bosshard… - Applied and …, 2007 - journals.asm.org
The commercially available LIVE/DEAD BacLight kit is enjoying increased popularity among
researchers in various fields of microbiology. Its use in combination with flow cytometry …

Using flow cytometry for counting natural planktonic bacteria and understanding the structure of planktonic bacterial communities

JM Gasol, PA Del Giorgio - Scientia Marina, 2000 - scientiamarina.revistas.csic.es
Flow cytometry is rapidly becoming a routine methodology in aquatic microbial ecology. The
combination of simple to use bench-top flow cytometers and highly fluorescent nucleic acid …

Monitoring microbiological changes in drinking water systems using a fast and reproducible flow cytometric method

EI Prest, F Hammes, S Kötzsch, MCM van Loosdrecht… - Water research, 2013 - Elsevier
Flow cytometry (FCM) is a rapid, cultivation-independent tool to assess and evaluate
bacteriological quality and biological stability of water. Here we demonstrate that a stringent …

Flow-cytometric total bacterial cell counts as a descriptive microbiological parameter for drinking water treatment processes

F Hammes, M Berney, Y Wang, M Vital, O Köster, T Egli - Water research, 2008 - Elsevier
There are significantly more microbial cells in drinking water than what can be cultured on
synthetic growth media. Nonetheless, cultivation-based heterotrophic plate counts (HPCs) …

Use of propidium monoazide for live/dead distinction in microbial ecology

A Nocker, P Sossa-Fernandez, MD Burr… - Applied and …, 2007 - journals.asm.org
One of the prerequisites of making ecological conclusions derived from genetic fingerprints
is that bacterial community profiles reflect the live portion of the sample of interest. Propidium …

Single bacterial strain capable of significant contribution to carbon cycling in the surface ocean

BE Pedler, LI Aluwihare, F Azam - Proceedings of the National Academy of …, 2014 - pnas.org
Marine dissolved organic carbon (DOC) encompasses one of the largest reservoirs of
carbon on Earth. Heterotrophic bacteria are the primary biotic force regulating the fate of this …

Cooking shapes the structure and function of the gut microbiome

RN Carmody, JE Bisanz, BP Bowen, CF Maurice… - Nature …, 2019 - nature.com
Diet is a critical determinant of variation in gut microbial structure and function, outweighing
even host genetics,–. Numerous microbiome studies have compared diets with divergent …