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Microbial experimental evolution–a proving ground for evolutionary theory and a tool for discovery
MJ McDonald - EMBO reports, 2019 - embopress.org
Microbial experimental evolution uses controlled laboratory populations to study the
mechanisms of evolution. The molecular analysis of evolved populations enables empirical …
mechanisms of evolution. The molecular analysis of evolved populations enables empirical …
Best practices in designing, sequencing, and identifying random DNA barcodes
Random DNA barcodes are a versatile tool for tracking cell lineages, with applications
ranging from development to cancer to evolution. Here, we review and critically evaluate …
ranging from development to cancer to evolution. Here, we review and critically evaluate …
The evolutionary dynamics and fitness landscape of clonal hematopoiesis
Somatic mutations acquired in healthy tissues as we age are major determinants of cancer
risk. Whether variants confer a fitness advantage or rise to detectable frequencies by chance …
risk. Whether variants confer a fitness advantage or rise to detectable frequencies by chance …
Mutualism-enhancing mutations dominate early adaptation in a two-species microbial community
Species interactions drive evolution while evolution shapes these interactions. The resulting
eco-evolutionary dynamics and their repeatability depend on how adaptive mutations …
eco-evolutionary dynamics and their repeatability depend on how adaptive mutations …
Bacterial adaptation is constrained in complex communities
A major unresolved question is how bacteria living in complex communities respond to
environmental changes. In communities, biotic interactions may either facilitate or constrain …
environmental changes. In communities, biotic interactions may either facilitate or constrain …
High-resolution lineage tracking reveals travelling wave of adaptation in laboratory yeast
In rapidly adapting asexual populations, including many microbial pathogens and viruses,
numerous mutant lineages often compete for dominance within the population,,,–. These …
numerous mutant lineages often compete for dominance within the population,,,–. These …
Inheritance of somatic mutations by animal offspring
Since 1892, it has been widely assumed that somatic mutations are evolutionarily irrelevant
in animals because they cannot be inherited by offspring. However, some nonbilaterians …
in animals because they cannot be inherited by offspring. However, some nonbilaterians …
Single-cell copy number variant detection reveals the dynamics and diversity of adaptation
Copy number variants (CNVs) are a pervasive source of genetic variation and evolutionary
potential, but the dynamics and diversity of CNVs within evolving populations remain …
potential, but the dynamics and diversity of CNVs within evolving populations remain …
Evolution, microbes, and changing ocean conditions
Experimental evolution and the associated theory are underutilized in marine microbial
studies; the two fields have developed largely in isolation. Here, we review evolutionary …
studies; the two fields have developed largely in isolation. Here, we review evolutionary …
Quantifying the local adaptive landscape of a nascent bacterial community
The fitness effects of all possible mutations available to an organism largely shape the
dynamics of evolutionary adaptation. Yet, whether and how this adaptive landscape …
dynamics of evolutionary adaptation. Yet, whether and how this adaptive landscape …