Diversity, ecology and evolution of Archaea

BJ Baker, V De Anda, KW Seitz, N Dombrowski… - Nature …, 2020 - nature.com
Compared to bacteria, our knowledge of archaeal biology is limited. Historically,
microbiologists have mostly relied on culturing and single-gene diversity surveys to …

Archaea and the origin of eukaryotes

L Eme, A Spang, J Lombard, CW Stairs… - Nature Reviews …, 2017 - nature.com
Woese and Fox's 1977 paper on the discovery of the Archaea triggered a revolution in the
field of evolutionary biology by showing that life was divided into not only prokaryotes and …

A standardized archaeal taxonomy for the Genome Taxonomy Database

C Rinke, M Chuvochina, AJ Mussig, PA Chaumeil… - Nature …, 2021 - nature.com
The accrual of genomic data from both cultured and uncultured microorganisms provides
new opportunities to develop systematic taxonomies based on evolutionary relationships …

The growing tree of Archaea: new perspectives on their diversity, evolution and ecology

PS Adam, G Borrel, C Brochier-Armanet… - The ISME …, 2017 - academic.oup.com
The Archaea occupy a key position in the Tree of Life, and are a major fraction of microbial
diversity. Abundant in soils, ocean sediments and the water column, they have crucial roles …

Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling

CJ Castelle, KC Wrighton, BC Thomas, LA Hug… - Current biology, 2015 - cell.com
Background Archaea represent a significant fraction of Earth's biodiversity, yet they remain
much less well understood than Bacteria. Gene surveys, a few metagenomic studies, and …

Bathyarchaeota: globally distributed metabolic generalists in anoxic environments

Z Zhou, J Pan, F Wang, JD Gu… - FEMS microbiology …, 2018 - academic.oup.com
Bathyarchaeota, formerly known as the Miscellaneous Crenarchaeotal Group, is a phylum of
global generalists that are widespread in anoxic sediments, which host relatively high …

Isolation of an autotrophic ammonia-oxidizing marine archaeon

M Könneke, AE Bernhard, JR de La Torre, CB Walker… - Nature, 2005 - nature.com
For years, microbiologists characterized the Archaea as obligate extremophiles that thrive in
environments too harsh for other organisms. The limited physiological diversity among …

A molecular view of microbial diversity and the biosphere

NR Pace - Science, 1997 - science.org
Over three decades of molecular-phylogenetic studies, researchers have compiled an
increasingly robust map of evolutionary diversification showing that the main diversity of life …

Review and re-analysis of domain-specific 16S primers

GC Baker, JJ Smith, DA Cowan - Journal of microbiological methods, 2003 - Elsevier
The Polymerase Chain Reaction (PCR) has facilitated the detection of unculturable
microorganisms in virtually any environmental source and has thus been used extensively in …

Use of DNA barcodes to identify flowering plants

WJ Kress, KJ Wurdack, EA Zimmer… - Proceedings of the …, 2005 - National Acad Sciences
Methods for identifying species by using short orthologous DNA sequences, known as “DNA
barcodes,” have been proposed and initiated to facilitate biodiversity studies, identify …