Phylogenetic analysis of Antarctic notothenioids illuminates the utility of RADseq for resolving Cenozoic adaptive radiations
Notothenioids are a clade of∼ 120 species of marine fishes distributed in extreme southern
hemisphere temperate near-shore habitats and in the Southern Ocean surrounding …
hemisphere temperate near-shore habitats and in the Southern Ocean surrounding …
Optimal rates for phylogenetic inference and experimental design in the era of genome-scale data sets
With the rise of genome-scale data sets, there has been a call for increased data scrutiny
and careful selection of loci that are appropriate to use in an attempt to resolve a …
and careful selection of loci that are appropriate to use in an attempt to resolve a …
Assessing support for Blaberoidea phylogeny suggests optimal locus quality
Phylogenomics seeks to use next‐generation data to robustly infer an organism's
evolutionary history. Yet, the practical caveats of phylogenomics motivate investigation of …
evolutionary history. Yet, the practical caveats of phylogenomics motivate investigation of …
Evolutionary rate variation among lineages in gene trees has a negative impact on species-tree inference
Phylogenetic analyses of genomic data provide a powerful means of reconstructing the
evolutionary relationships among organisms, yet such analyses are often hindered by …
evolutionary relationships among organisms, yet such analyses are often hindered by …
Genome-scale profiling reveals noncoding loci carry higher proportions of concordant data
Many evolutionary relationships remain controversial despite whole-genome sequencing
data. These controversies arise, in part, due to challenges associated with accurately …
data. These controversies arise, in part, due to challenges associated with accurately …
[PDF][PDF] Filtration of gene trees from 9,000 exons, introns, and UCEs disentangles conflicting phylogenomic relationships in tree frogs (Hylidae)
CR Hutter, W Duellman - Genome Biology and Evolution, 2023 - academic.oup.com
An emerging challenge in interpreting phylogenomic data sets is that concatenation and
multi-species coalescent summary species tree approaches may produce conflicting results …
multi-species coalescent summary species tree approaches may produce conflicting results …
Accuracy in near-perfect virus phylogenies
Phylogenetic trees from real-world data often include short edges with very few substitutions
per site, which can lead to partially resolved trees and poor accuracy. Theory indicates that …
per site, which can lead to partially resolved trees and poor accuracy. Theory indicates that …
Phylogenetic signal is associated with the degree of variation in root-to-tip distances
The phylogenetic information contained in sequence data is partly determined by the overall
rate of nucleotide substitution in the genomic region in question. However, phylogenetic …
rate of nucleotide substitution in the genomic region in question. However, phylogenetic …
The Implications of Over-Estimating Gene Tree Discordance on a Rapid-Radiation Species Tree (Blattodea: Blaberidae)
Patterns of discordance between gene trees and the species trees they reside in are crucial
to the debate over the superiority of coalescent or concatenation approaches to tree …
to the debate over the superiority of coalescent or concatenation approaches to tree …
Phylogenetic synecdoche demonstrates optimality of subsampling and improves recovery of the Blaberoidea phylogeny
Phylogenomics seeks to use next-generation data to robustly infer an organism's
evolutionary history. Yet, the practical caveats of phylogenomics motivates investigation of …
evolutionary history. Yet, the practical caveats of phylogenomics motivates investigation of …