Pushing the frontiers of biodiversity research: Unveiling the global diversity, distribution, and conservation of fungi
Fungi comprise approximately 20% of all eukaryotic species and are connected to virtually
all life forms on Earth. Yet, their diversity remains contentious, their distribution elusive, and …
all life forms on Earth. Yet, their diversity remains contentious, their distribution elusive, and …
Best practices in metabarcoding of fungi: from experimental design to results
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
GTDB-Tk v2: memory friendly classification with the genome taxonomy database
Abstract Summary The Genome Taxonomy Database (GTDB) and associated taxonomic
classification toolkit (GTDB-Tk) have been widely adopted by the microbiology community …
classification toolkit (GTDB-Tk) have been widely adopted by the microbiology community …
PICRUSt2 for prediction of metagenome functions
To the Editor—One limitation of microbial community marker-gene sequencing is that it does
not provide information about the functional composition of sampled communities …
not provide information about the functional composition of sampled communities …
Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?
True fungi (Fungi) and fungus-like organisms (eg Mycetozoa, Oomycota) constitute the
second largest group of organisms based on global richness estimates, with around 3 …
second largest group of organisms based on global richness estimates, with around 3 …
Ultrafast Sample placement on Existing tRees (UShER) enables real-time phylogenetics for the SARS-CoV-2 pandemic
As the SARS-CoV-2 virus spreads through human populations, the unprecedented
accumulation of viral genome sequences is ushering in a new era of 'genomic contact …
accumulation of viral genome sequences is ushering in a new era of 'genomic contact …
Ecological memory of recurrent drought modifies soil processes via changes in soil microbial community
Climate change is altering the frequency and severity of drought events. Recent evidence
indicates that drought may produce legacy effects on soil microbial communities. However, it …
indicates that drought may produce legacy effects on soil microbial communities. However, it …
[HTML][HTML] Population genomics of post-glacial western Eurasia
Western Eurasia witnessed several large-scale human migrations during the Holocene,,,–.
Here, to investigate the cross-continental effects of these migrations, we shotgun-sequenced …
Here, to investigate the cross-continental effects of these migrations, we shotgun-sequenced …
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
Motivation Phylogenies are important for fundamental biological research, but also have
numerous applications in biotechnology, agriculture and medicine. Finding the optimal tree …
numerous applications in biotechnology, agriculture and medicine. Finding the optimal tree …
PICRUSt2: An improved and extensible approach for metagenome inference
One major limitation of microbial community marker gene sequencing is that it does not
provide direct information on the functional composition of sampled communities. Here, we …
provide direct information on the functional composition of sampled communities. Here, we …