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Reintroducing mothur: 10 years later
PD Schloss - Applied and environmental microbiology, 2020 - journals.asm.org
More than 10 years ago, we published the paper describing the mothur software package in
Applied and Environmental Microbiology. Our goal was to create a comprehensive package …
Applied and Environmental Microbiology. Our goal was to create a comprehensive package …
[HTML][HTML] Mining microbes for mental health: determining the role of microbial metabolic pathways in human brain health and disease
There is increasing knowledge regarding the role of the microbiome in modulating brain and
behaviour. Indeed, the actions of microbial metabolites are key for appropriate gut-brain …
behaviour. Indeed, the actions of microbial metabolites are key for appropriate gut-brain …
Bacteroidota inhibit microglia clearance of amyloid-beta and promote plaque deposition in Alzheimer's disease mouse models
The gut microbiota and microglia play critical roles in Alzheimer's disease (AD), and
elevated Bacteroides is correlated with cerebrospinal fluid amyloid-β (Aβ) and tau levels in …
elevated Bacteroides is correlated with cerebrospinal fluid amyloid-β (Aβ) and tau levels in …
Parallelization of MAFFT for large-scale multiple sequence alignments
We report an update for the MAFFT multiple sequence alignment program to enable parallel
calculation of large numbers of sequences. The G-INS-1 option of MAFFT was recently …
calculation of large numbers of sequences. The G-INS-1 option of MAFFT was recently …
Development of gut microbiota during the first 2 years of life
ML Wernroth, S Peura, AM Hedman, S Hetty… - Scientific reports, 2022 - nature.com
Although development of microbiota in childhood has been linked to chronic immune-
related conditions, early childhood determinants of microbiota development have not been …
related conditions, early childhood determinants of microbiota development have not been …
Environmentally dependent interactions shape patterns in gene content across natural microbiomes
Sequencing surveys of microbial communities in hosts, oceans and soils have revealed
ubiquitous patterns linking community composition to environmental conditions. While …
ubiquitous patterns linking community composition to environmental conditions. While …
[HTML][HTML] MiDAS 3: an ecosystem-specific reference database, taxonomy and knowledge platform for activated sludge and anaerobic digesters reveals species-level …
The function of the microbiomes in wastewater treatment systems and anaerobic digesters is
dictated by the physiological activity of their members and complex interactions between …
dictated by the physiological activity of their members and complex interactions between …
Relaxed targeting rules help PIWI proteins silence transposons
In eukaryotes, small RNA guides, such as small interfering RNAs and microRNAs, direct
AGO-clade Argonaute proteins to regulate gene expression and defend the genome against …
AGO-clade Argonaute proteins to regulate gene expression and defend the genome against …
Lack of detection of a human placenta microbiome in samples from preterm and term deliveries
Background Historically, the human womb has been thought to be sterile in healthy
pregnancies, but this idea has been challenged by recent studies using DNA sequence …
pregnancies, but this idea has been challenged by recent studies using DNA sequence …
Agricultural management and plant selection interactively affect rhizosphere microbial community structure and nitrogen cycling
Background Rhizosphere microbial communities are key regulators of plant performance,
yet few studies have assessed the impact of different management approaches on the …
yet few studies have assessed the impact of different management approaches on the …