In vitro selection of functional nucleic acids

DS Wilson, JW Szostak - Annual review of biochemistry, 1999 - annualreviews.org
▪ Abstract In vitro selection allows rare functional RNA or DNA molecules to be isolated from
pools of over 1015 different sequences. This approach has been used to identify RNA and …

Influence of RNA secondary structure on the pre-mRNA splicing process

E Buratti, FE Baralle - Molecular and cellular biology, 2004 - Taylor & Francis
Pre-mRNA splicing in eukaryotes requires joining together the nucleotides of the various
mRNA-coding regions (exons) after recognizing them from the normally vastly superior …

ViennaRNA Package 2.0

R Lorenz, SH Bernhart… - Algorithms for molecular …, 2011 - Springer
Background Secondary structure forms an important intermediate level of description of
nucleic acids that encapsulates the dominating part of the folding energy, is often well …

[PDF][PDF] Fast folding and comparison of RNA secondary structures

IL Hofacker, W Fontana, PF Stadler… - Monatshefte fur …, 1994 - academia.edu
Computer codes for computation and comparison of RNA secondary structures, the Vienna
RNA paCKage, are presented, that are based on dynamic programming algorithms and aim …

From sequences to shapes and back: a case study in RNA secondary structures

P Schuster, W Fontana, PF Stadler… - Proceedings of the …, 1994 - royalsocietypublishing.org
RNA folding is viewed here as a map assigning secondary structures to sequences. At fixed
chain length the number of sequences far exceeds the number of structures. Frequencies of …

Complete suboptimal folding of RNA and the stability of secondary structures

S Wuchty, W Fontana, IL Hofacker… - … : Original Research on …, 1999 - Wiley Online Library
An algorithm is presented for generating rigorously all suboptimal secondary structures
between the minimum free energy and an arbitrary upper limit. The algorithm is particularly …

Plasticity, evolvability, and modularity in RNA

LW Ancel, W Fontana - Journal of Experimental Zoology, 2000 - Wiley Online Library
RNA folding from sequences into secondary structures is a simple yet powerful,
biophysically grounded model of a genotype–phenotype map in which concepts like …

Innovation and robustness in complex regulatory gene networks

S Ciliberti, OC Martin, A Wagner - Proceedings of the …, 2007 - National Acad Sciences
The history of life involves countless evolutionary innovations, a steady stream of ingenuity
that has been flowing for more than 3 billion years. Very little is known about the principles of …

Perspective: a critique of Sewall Wright's shifting balance theory of evolution

JA Coyne, NH Barton, M Turelli - Evolution, 1997 - Wiley Online Library
We evaluate Sewall Wright's three‐phase “shifting balance” theory of evolution, examining
both the theoretical issues and the relevant data from nature and the laboratory. We …

Single-nucleotide polymorphisms can cause different structural folds of mRNA

LX Shen, JP Basilion… - Proceedings of the …, 1999 - National Acad Sciences
Single-nucleotide polymorphisms (SNPs) are the most common type of genetic variation in
man. Genes containing one or more SNPs can give rise to two or more allelic forms of …