On the maverick Planctomycetes

S Wiegand, M Jogler, C Jogler - FEMS microbiology reviews, 2018 - academic.oup.com
Planctomycetes are ubiquitous, environmentally and biotechnologically important bacteria
that are key players in global carbon and nitrogen cycles. Ever since their first discovery in …

Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities

SG Acinas, P Sánchez, G Salazar… - Communications …, 2021 - nature.com
The deep sea, the largest ocean's compartment, drives planetary-scale biogeochemical
cycling. Yet, the functional exploration of its microbial communities lags far behind other …

Biological composition and microbial dynamics of sinking particulate organic matter at abyssal depths in the oligotrophic open ocean

D Boeuf, BR Edwards, JM Eppley, SK Hu… - Proceedings of the …, 2019 - pnas.org
Sinking particles are a critical conduit for the export of organic material from surface waters
to the deep ocean. Despite their importance in oceanic carbon cycling and export, little is …

[HTML][HTML] Microbial community and antimicrobial resistance niche differentiation in a multistage, surface flow constructed wetland

F Bydalek, G Webster, R Barden, AJ Weightman… - Water Research, 2024 - Elsevier
Free-living (FL) and particulate-associated (PA) communities are distinct bacterioplankton
lifestyles with different mobility and dissemination routes. Understanding spatio-temporal …

Recent advances in metagenomic analysis of different ecological niches for enhanced biodegradation of recalcitrant lignocellulosic biomass

D Kukkar, PK Sharma, KH Kim - Environmental Research, 2022 - Elsevier
Lignocellulose wastes stemming from agricultural residues can offer an excellent
opportunity as alternative energy solutions in addition to fossil fuels. Besides, the …

[HTML][HTML] Determination and quantification of microbial communities and antimicrobial resistance on food through host DNA-depleted metagenomics

SJ Bloomfield, AL Zomer, J O'grady, GL Kay, J Wain… - Food …, 2023 - Elsevier
Food products carry bacteria unless specifically sterilised. These bacteria can be
pathogenic, commensal or associated with food spoilage, and may also be resistant to …

Lacustrine plastisphere: distinct succession and assembly processes of prokaryotic and eukaryotic communities and role of site, time, and polymer types

W Zhang, G Bhagwat, T Palanisami, S Liang, W Wan… - Water Research, 2024 - Elsevier
Microplastics as a carrier can promote microbial diffusion, potentially influencing the
ecological functions of microbial communities in aquatic environments. However, our …

Diversity and origins of bacterial and archaeal viruses on sinking particles reaching the abyssal ocean

E Luo, AO Leu, JM Eppley, DM Karl… - The ISME …, 2022 - academic.oup.com
Sinking particles and particle-associated microbes influence global biogeochemistry
through particulate matter export from the surface to the deep ocean. Despite ongoing …

Prokaryotic niche partitioning between suspended and sinking marine particles

MT Duret, RS Lampitt, P Lam - Environmental microbiology …, 2019 - Wiley Online Library
Suspended particles are major organic carbon substrates for heterotrophic microorganisms
in the mesopelagic ocean (100–1000 m). Nonetheless, communities associated with these …

Fine metagenomic profile of the Mediterranean stratified and mixed water columns revealed by assembly and recruitment

JM Haro-Moreno, M López-Pérez, JR de la Torre… - Microbiome, 2018 - Springer
Background The photic zone of aquatic habitats is subjected to strong physicochemical
gradients. To analyze the fine-scale variations in the marine microbiome, we collected seven …