Assessing the response of an urban stream ecosystem to salinization under different flow regimes

IM Pimentel, D Baikova, D Buchner… - Science of The Total …, 2024 - Elsevier
Urban streams are exposed to a variety of anthropogenic stressors. Freshwater salinization
is a key stressor in these ecosystems that is predicted to be further exacerbated by climate …

Functional and compositional responses of stream microphytobenthic communities to multiple stressors increase and release in a mesocosm experiment

NAS Mayombo, AM Burfeid-Castellanos… - Science of The Total …, 2024 - Elsevier
Field observations form the basis of the majority of studies on microphytobenthic algal
communities in freshwater ecosystems. Controlled mesocosm experiments data are …

PRONAME: a user-friendly pipeline to process long-read nanopore metabarcoding data by generating high-quality consensus sequences

B Dubois, M Delitte, S Lengrand, C Bragard… - Frontiers in …, 2024 - frontiersin.org
Background The study of sample taxonomic composition has evolved from direct
observations and labor-intensive morphological studies to different DNA sequencing …

GROND: a quality-checked and publicly available database of full-length 16S-ITS-23S rRNA operon sequences

CJ Walsh, M Srinivas, TP Stinear… - Microbial …, 2024 - microbiologyresearch.org
Sequence comparison of 16S rRNA PCR amplicons is an established approach to
taxonomically identify bacterial isolates and profile complex microbial communities. One …

Assessment of microphytobenthos communities in the Kinzig catchment using photosynthesis-related traits, digital light microscopy and 18S-V9 amplicon sequencing

NAS Mayombo, M Dani, M Kloster… - Frontiers in Ecology …, 2024 - frontiersin.org
Introduction Microalgae form an essential group of benthic organisms that respond swiftly to
environmental changes. They are widely used as bioindicators of anthropogenic stressors in …

Complex compositional and cellular response of river sediment microbiomes to multiple anthropogenic stressors

TL Stach, A Deep, I Madge Pimentel, D Buchner… - bioRxiv, 2024 - biorxiv.org
Rivers face constant anthropogenic stressors, resulting in significant changes in microbial
community composition. What remains unclear is whether these changes render the …

Beneath the Surface: Fungal Community Associated with Brown Alga Saccharina latissima A Molecular Characterization through DNA Extraction, PCR Amplification …

S Karoliussen - 2024 - munin.uit.no
Fungi can be found in every marine habitat, but our knowledge about their diversity, function,
and potential is still limited Studies show that marine fungi play an important role in …

Integrative Approaches: Combining Metagenomics and Network Science

R Mishra, S Gupta, D Kumar - Genomic Intelligence - taylorfrancis.com
The amalgamation of metagenomics and network science ushers in a new paradigm in
scientific exploration, promising unparalleled insights into microbial communities …

AI-Metagenomics Fusion: Paving the Way for Precision Microbiomics

S Gupta - Genomic Intelligence - taylorfrancis.com
In the rapidly evolving landscape of microbiome research, the fusion of artificial intelligence
(AI) and metagenomics has paved the way for Precision Microbiomics, a paradigm that …