CNVkit: genome-wide copy number detection and visualization from targeted DNA sequencing
Germline copy number variants (CNVs) and somatic copy number alterations (SCNAs) are
of significant importance in syndromic conditions and cancer. Massively parallel sequencing …
of significant importance in syndromic conditions and cancer. Massively parallel sequencing …
Exome sequencing and whole genome sequencing for the detection of copy number variation
JY Hehir-Kwa, R Pfundt, JA Veltman - Expert review of molecular …, 2015 - Taylor & Francis
Many laboratories now use genomic microarrays as their first-tier diagnostic test for copy
number variation (CNV) detection. In addition, whole exome sequencing is increasingly …
number variation (CNV) detection. In addition, whole exome sequencing is increasingly …
[HTML][HTML] Points to consider in the detection of germline structural variants using next-generation sequencing: a statement of the American College of Medical Genetics …
G Raca, C Astbury, A Behlmann, MJ De Castro… - Genetics in …, 2023 - Elsevier
Disclaimer: This Points to Consider document is designed primarily as an educational
resource for clinical laboratory geneticists to help them provide quality clinical laboratory …
resource for clinical laboratory geneticists to help them provide quality clinical laboratory …
[HTML][HTML] Detection of elusive DNA copy-number variations in hereditary disease and cancer through the use of noncoding and off-target sequencing reads
M Quinodoz, K Kaminska, F Cancellieri, JH Han… - The American Journal of …, 2024 - cell.com
Copy-number variants (CNVs) play a substantial role in the molecular pathogenesis of
hereditary disease and cancer, as well as in normal human interindividual variation …
hereditary disease and cancer, as well as in normal human interindividual variation …
Assessing the reproducibility of exome copy number variations predictions
CS Hong, LN Singh, JC Mullikin, LG Biesecker - Genome medicine, 2016 - Springer
Background Reproducibility is receiving increased attention across many domains of
science and genomics is no exception. Efforts to identify copy number variations (CNVs) …
science and genomics is no exception. Efforts to identify copy number variations (CNVs) …
PEcnv: accurate and efficient detection of copy number variations of various lengths
X Wang, Y Xu, R Liu, X Lai, Y Liu, S Wang… - Briefings in …, 2022 - academic.oup.com
Copy number variation (CNV) is a class of key biomarkers in many complex traits and
diseases. Detecting CNV from sequencing data is a substantial bioinformatics problem and …
diseases. Detecting CNV from sequencing data is a substantial bioinformatics problem and …
Discovery of targetable genetic alterations in advanced non-small cell lung cancer using a next-generation sequencing-based circulating tumor DNA assay
H Hou, X Yang, J Zhang, Z Zhang, X Xu, X Zhang… - Scientific reports, 2017 - nature.com
Abstract Next-generation sequencing (NGS)-based circulating tumor DNA (ctDNA) assays
have provided a new method of identifying tumor-driving genes in patients with advanced …
have provided a new method of identifying tumor-driving genes in patients with advanced …
The utility of next-generation sequencing in gene discovery for mutation-negative patients with Rett syndrome
Rett syndrome (RTT) is a rare, severe disorder of neuronal plasticity that predominantly
affects girls. Girls with RTT usually appear asymptomatic in the first 6–18 months of life, but …
affects girls. Girls with RTT usually appear asymptomatic in the first 6–18 months of life, but …
HBOS-CNV: A new approach to detect copy number variations from next-generation sequencing data
Y Guo, S Wang, X Yuan - Frontiers in Genetics, 2021 - frontiersin.org
Copy number variation (CNV) is a genomic mutation that plays an important role in tumor
evolution and tumor genesis. Accurate detection of CNVs from next-generation sequencing …
evolution and tumor genesis. Accurate detection of CNVs from next-generation sequencing …
[HTML][HTML] Characterization and genomic localization of a SMAD4 processed pseudogene
CM Watson, N Camm, LA Crinnion… - The Journal of Molecular …, 2017 - Elsevier
Like many clinical diagnostic laboratories, the Yorkshire Regional Genetics Service
undertakes routine investigation of cancer-predisposed individuals by high-throughput …
undertakes routine investigation of cancer-predisposed individuals by high-throughput …