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Machine learning-guided protein engineering
Recent progress in engineering highly promising biocatalysts has increasingly involved
machine learning methods. These methods leverage existing experimental and simulation …
machine learning methods. These methods leverage existing experimental and simulation …
Learning from protein engineering by deconvolution of multi‐mutational variants
This review analyzes a development in biochemistry, enzymology and biotechnology that
originally came as a surprise. Following the establishment of directed evolution of …
originally came as a surprise. Following the establishment of directed evolution of …
Electrostatics as a Guiding Principle in Understanding and Designing Enzymes
Enzyme design faces challenges related to the implementation of the basic principles that
govern the catalytic activity in natural enzymes. In this work, we revisit basic electrostatic …
govern the catalytic activity in natural enzymes. In this work, we revisit basic electrostatic …
Advances in alginate lyases and the potential application of enzymatic prepared alginate oligosaccharides: A mini review
C Chen, X Li, C Lu, X Zhou, L Chen, C Qiu, Z **… - International Journal of …, 2024 - Elsevier
Alginate is mainly a linear polysaccharide composed of randomly arranged β-D-mannuronic
acid and α-L-guluronic acid linked by α, β-(1, 4)-glycosidic bonds. Alginate lyases degrade …
acid and α-L-guluronic acid linked by α, β-(1, 4)-glycosidic bonds. Alginate lyases degrade …
[HTML][HTML] Protein representations: Encoding biological information for machine learning in biocatalysis
D Harding-Larsen, J Funk, NG Madsen… - Biotechnology …, 2024 - Elsevier
Enzymes offer a more environmentally friendly and low-impact solution to conventional
chemistry, but they often require additional engineering for their application in industrial …
chemistry, but they often require additional engineering for their application in industrial …
[HTML][HTML] Enzyme engineering for biocatalysis
Contemporary Biocatalysis heavily relies on enzyme engineering as natural enzymes
frequently lack the requisite attributes for effective organic synthesis. The inherent limitations …
frequently lack the requisite attributes for effective organic synthesis. The inherent limitations …
Combining flexible region design and automatic design to enhance the thermal stability and catalytic efficiency of leucine dehydrogenase
X Zhang, X Zhang, H Shi, H Zhang… - Journal of Agricultural …, 2024 - ACS Publications
Leucine dehydrogenase (LeuDH, EC 1.4. 1.9) can reversibly catalyze the oxidative
deamination of l-leucine and some other specific α-amino acids to form the corresponding α …
deamination of l-leucine and some other specific α-amino acids to form the corresponding α …
Comprehensive Understanding of Laboratory Evolution for Food Enzymes: From Design to Screening Innovations
J Wu, Z Wang, M Zeng, Z He, Q Chen… - Journal of Agricultural …, 2024 - ACS Publications
In the field of food processing, enzymes play a pivotal role in improving product quality and
flavor, and extending shelf life. However, the exposure of traditional food enzymes to high …
flavor, and extending shelf life. However, the exposure of traditional food enzymes to high …
Water-mediated active conformational transitions of lipase on organic solvent interfaces
J Zhang, J Chen, Y Sha, J Deng, J Wu, P Yang… - International Journal of …, 2024 - Elsevier
When it comes to enzyme stability and their application in organic solvents, enzyme
biocatalysis has emerged as a popular substitute for conventional chemical processes …
biocatalysis has emerged as a popular substitute for conventional chemical processes …
Hook loop dynamics engineering transcended the barrier of activity-stability trade-off and boosted the thermostability of enzymes
W Chong, Z Zhang, Z Li, S Meng, B Nian… - International Journal of …, 2024 - Elsevier
The improvement of enzyme thermostability often accompanies the decreased activity due to
the loss of the key regions' flexibility. As a representative structure, unlocking the potential of …
the loss of the key regions' flexibility. As a representative structure, unlocking the potential of …