Noncanonical amino acids in biocatalysis
Z Birch-Price, FJ Hardy, TM Lister, AR Kohn… - Chemical …, 2024 - ACS Publications
In recent years, powerful genetic code reprogramming methods have emerged that allow
new functional components to be embedded into proteins as noncanonical amino acid …
new functional components to be embedded into proteins as noncanonical amino acid …
Biases in small RNA deep sequencing data
CA Raabe, TH Tang, J Brosius… - Nucleic acids …, 2014 - academic.oup.com
High-throughput RNA sequencing (RNA-seq) is considered a powerful tool for novel gene
discovery and fine-tuned transcriptional profiling. The digital nature of RNA-seq is also …
discovery and fine-tuned transcriptional profiling. The digital nature of RNA-seq is also …
RNA repair: hiding in plain sight
S Shuman - Annual Review of Genetics, 2023 - annualreviews.org
Enzymes that phosphorylate, dephosphorylate, and ligate RNA 5′ and 3′ ends were
discovered more than half a century ago and were eventually shown to repair purposeful …
discovered more than half a century ago and were eventually shown to repair purposeful …
Molecular architecture of the human tRNA ligase complex
A Kroupova, F Ackle, I Asanović, S Weitzer… - Elife, 2021 - elifesciences.org
RtcB enzymes are RNA ligases that play essential roles in tRNA splicing, unfolded protein
response, and RNA repair. In metazoa, RtcB functions as part of a five-subunit tRNA ligase …
response, and RNA repair. In metazoa, RtcB functions as part of a five-subunit tRNA ligase …
DNA and RNA ligases: structural variations and shared mechanisms
JM Pascal - Current opinion in structural biology, 2008 - Elsevier
DNA and RNA ligases join 3′ OH and 5′ PO4 ends in polynucleotide substrates using a
three-step reaction mechanism that involves covalent modification of both the ligase enzyme …
three-step reaction mechanism that involves covalent modification of both the ligase enzyme …
Direct comparison of nick-joining activity of the nucleic acid ligases from bacteriophage T4
DR Bullard, RP Bowater - Biochemical Journal, 2006 - portlandpress.com
The genome of bacteriophage T4 encodes three polynucleotide ligases, which seal the
backbone of nucleic acids during infection of host bacteria. The T4Dnl (T4 DNA ligase) and …
backbone of nucleic acids during infection of host bacteria. The T4Dnl (T4 DNA ligase) and …
Last stop on the road to repair: structure of E. coli DNA ligase bound to nicked DNA-adenylate
J Nandakumar, PA Nair, S Shuman - Molecular cell, 2007 - cell.com
NAD+-dependent DNA ligases (LigA) are ubiquitous in bacteria and essential for growth.
Their distinctive substrate specificity and domain organization vis-a-vis human ATP …
Their distinctive substrate specificity and domain organization vis-a-vis human ATP …
RNA ligase structures reveal the basis for RNA specificity and conformational changes that drive ligation forward
Summary T4 RNA ligase 2 (Rnl2) and kinetoplastid RNA editing ligases exemplify a family
of RNA repair enzymes that seal 3′ OH/5′ PO 4 nicks in duplex RNAs via ligase …
of RNA repair enzymes that seal 3′ OH/5′ PO 4 nicks in duplex RNAs via ligase …
Structural basis for nick recognition by a minimal pluripotent DNA ligase
Chlorella virus DNA ligase, the smallest eukaryotic ligase known, has pluripotent biological
activity and an intrinsic nick-sensing function, despite having none of the accessory domains …
activity and an intrinsic nick-sensing function, despite having none of the accessory domains …
RNA repair: an antidote to cytotoxic eukaryal RNA damage
RNA healing and sealing enzymes drive informational and stress response pathways
entailing repair of programmed 2′, 3′ cyclic PO 4/5′-OH breaks. Fungal, plant, and …
entailing repair of programmed 2′, 3′ cyclic PO 4/5′-OH breaks. Fungal, plant, and …