Microbial genes and pathways in inflammatory bowel disease

M Schirmer, A Garner, H Vlamakis… - Nature Reviews …, 2019 - nature.com
Perturbations in the intestinal microbiome are implicated in inflammatory bowel disease
(IBD). Studies of treatment-naive patients have identified microbial taxa associated with …

Host–microbiota interactions in immune-mediated diseases

WE Ruff, TM Greiling, MA Kriegel - Nature Reviews Microbiology, 2020 - nature.com
Host–microbiota interactions are fundamental for the development of the immune system.
Drastic changes in modern environments and lifestyles have led to an imbalance of this …

[HTML][HTML] Mucosal fungi promote gut barrier function and social behavior via Type 17 immunity

I Leonardi, IH Gao, WY Lin, M Allen, XV Li, WD Fiers… - Cell, 2022 - cell.com
Fungal communities (the mycobiota) are an integral part of the gut microbiota, and the
disruption of their integrity contributes to local and gut-distal pathologies. Yet, the …

Longitudinal multi-omics reveals subset-specific mechanisms underlying irritable bowel syndrome

RAT Mars, Y Yang, T Ward, M Houtti, S Priya… - Cell, 2020 - cell.com
The gut microbiome has been implicated in multiple human chronic gastrointestinal (GI)
disorders. Determining its mechanistic role in disease has been difficult due to apparent …

Self-tunable engineered yeast probiotics for the treatment of inflammatory bowel disease

BM Scott, C Gutierrez-Vazquez, LM Sanmarco… - Nature medicine, 2021 - nature.com
Inflammatory bowel disease (IBD) is a complex chronic inflammatory disorder of the
gastrointestinal tract. Extracellular adenosine triphosphate (eATP) produced by the …

[HTML][HTML] Rhein modulates host purine metabolism in intestine through gut microbiota and ameliorates experimental colitis

J Wu, Z Wei, P Cheng, C Qian, F Xu, Y Yang… - Theranostics, 2020 - ncbi.nlm.nih.gov
Background: Gut microbiota, which plays a crucial role in inflammatory bowel diseases
(IBD), might have therapeutic benefits for ulcerative colitis or Crohn's disease. Targeting gut …

[HTML][HTML] Commensal bacteria and fungi differentially regulate tumor responses to radiation therapy

SL Shiao, KM Kershaw, JJ Limon, S You, J Yoon… - Cancer cell, 2021 - cell.com
Studies suggest that the efficacy of cancer chemotherapy and immunotherapy is influenced
by intestinal bacteria. However, the influence of the microbiome on radiation therapy is not …

Intra-and inter-cellular rewiring of the human colon during ulcerative colitis

CS Smillie, M Biton, J Ordovas-Montanes, KM Sullivan… - Cell, 2019 - cell.com
Genome-wide association studies (GWAS) have revealed risk alleles for ulcerative colitis
(UC). To understand their cell type specificities and pathways of action, we generate an atlas …

Gut microbiota and IBD: causation or correlation?

J Ni, GD Wu, L Albenberg, VT Tomov - Nature reviews Gastroenterology …, 2017 - nature.com
A general consensus exists that IBD is associated with compositional and metabolic
changes in the intestinal microbiota (dysbiosis). However, a direct causal relationship …

Debaryomyces is enriched in Crohn's disease intestinal tissue and impairs healing in mice

U Jain, AM Ver Heul, S **ong, MH Gregory, EG Demers… - Science, 2021 - science.org
Alterations of the mycobiota composition associated with Crohn's disease (CD) are
challenging to link to defining elements of pathophysiology, such as poor injury repair. Using …