Horizontal gene transfer and adaptive evolution in bacteria

BJ Arnold, IT Huang, WP Hanage - Nature Reviews Microbiology, 2022 - nature.com
Horizontal gene transfer (HGT) is arguably the most conspicuous feature of bacterial
evolution. Evidence for HGT is found in most bacterial genomes. Although HGT can …

Horizontal gene transfer: building the web of life

SM Soucy, J Huang, JP Gogarten - Nature Reviews Genetics, 2015 - nature.com
Horizontal gene transfer (HGT) is the sharing of genetic material between organisms that are
not in a parent–offspring relationship. HGT is a widely recognized mechanism for adaptation …

The pan-immune system of bacteria: antiviral defence as a community resource

A Bernheim, R Sorek - Nature reviews microbiology, 2020 - nature.com
Viruses and their hosts are engaged in a constant arms race leading to the evolution of
antiviral defence mechanisms. Recent studies have revealed that the immune arsenal of …

Mechanisms and clinical importance of bacteriophage resistance

JE Egido, AR Costa… - FEMS microbiology …, 2022 - academic.oup.com
We are in the midst of a golden age of uncovering defense systems against bacteriophages.
Apart from the fundamental interest in these defense systems, and revolutionary applications …

Expanded diversity of Asgard archaea and their relationships with eukaryotes

Y Liu, KS Makarova, WC Huang, YI Wolf… - Nature, 2021 - nature.com
Asgard is a recently discovered superphylum of archaea that appears to include the closest
archaeal relatives of eukaryotes,,,–. Debate continues as to whether the archaeal ancestor …

A global survey of prokaryotic genomes reveals the eco-evolutionary pressures driving horizontal gene transfer

M Dmitrijeva, J Tackmann… - Nature Ecology & …, 2024 - nature.com
Horizontal gene transfer, the exchange of genetic material through means other than
reproduction, is a fundamental force in prokaryotic genome evolution. Genomic persistence …

Evolution by gene loss

R Albalat, C Cañestro - Nature Reviews Genetics, 2016 - nature.com
The recent increase in genomic data is revealing an unexpected perspective of gene loss as
a pervasive source of genetic variation that can cause adaptive phenotypic diversity. This …

Ecology and evolution of metabolic cross-feeding interactions in bacteria

G D'Souza, S Shitut, D Preussger, G Yousif… - Natural product …, 2018 - pubs.rsc.org
Literature covered: early 2000s to late 2017 Bacteria frequently exchange metabolites with
other micro-and macro-organisms. In these often obligate cross-feeding interactions, primary …

Diversity, evolution, and classification of the RNA-guided nucleases TnpB and Cas12

H Altae-Tran, SA Shmakov, KS Makarova… - Proceedings of the …, 2023 - pnas.org
The TnpB proteins are transposon-associated RNA-guided nucleases that are among the
most abundant proteins encoded in bacterial and archaeal genomes, but whose functions in …

Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae

S O'donnell, JX Yue, OA Saada, N Agier, C Caradec… - Nature Genetics, 2023 - nature.com
Pangenomes provide access to an accurate representation of the genetic diversity of
species, both in terms of sequence polymorphisms and structural variants (SVs). Here we …