PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems

A Ghaffarizadeh, R Heiland, SH Friedman… - PLoS computational …, 2018 - journals.plos.org
Many multicellular systems problems can only be understood by studying how cells move,
grow, divide, interact, and die. Tissue-scale dynamics emerge from systems of many …

[HTML][HTML] Organ-specific fuel rewiring in acute and chronic hypoxia redistributes glucose and fatty acid metabolism

AD Midha, Y Zhou, BB Queliconi, AM Barrios… - Cell metabolism, 2023 - cell.com
Oxygen deprivation can be detrimental. However, chronic hypoxia is also associated with
decreased incidence of metabolic syndrome and cardiovascular disease in high-altitude …

Non-Coding RNAs of Mitochondrial Origin: Roles in Cell Division and Implications in Cancer

R Piergentili, S Sechi - International Journal of Molecular …, 2024 - pmc.ncbi.nlm.nih.gov
Non-coding RNAs (ncRNAs) are a heterogeneous group, in terms of structure and sequence
length, consisting of RNA molecules that do not code for proteins. These ncRNAs have a …

Therapy resistance in cancers: phenotypic, metabolic, epigenetic and tumour microenvironmental perspectives

T Zahan, PK Das, SF Akter, R Habib… - Anti-Cancer Agents …, 2020 - ingentaconnect.com
Background: Chemoresistance is a vital problem in cancer therapy where cancer cells
develop mechanisms to encounter the effect of chemotherapeutics, resulting in cancer …

Ref-1 redox activity alters cancer cell metabolism in pancreatic cancer: exploiting this novel finding as a potential target

S Gampala, F Shah, X Lu, H Moon, O Babb… - Journal of Experimental …, 2021 - Springer
Background Pancreatic cancer is a complex disease with a desmoplastic stroma, extreme
hypoxia, and inherent resistance to therapy. Understanding the signaling and adaptive …

Effects of intermittent hypoxia on expression of glucose metabolism genes in MCF7 breast cancer cell line

Y Jarrar, M Zihlif, AQ Al Bawab… - Current Cancer Drug …, 2020 - ingentaconnect.com
Background: Hypoxic condition induces molecular alterations which affect the survival rate
and chemo-resistant phenotype of cancer cells. Objective: The aim of this study is to …

Singlet oxygen phosphorescence detection in vivo identifies PDT-induced anoxia in solid tumors

S Hackbarth, W Islam, J Fang, V Subr, B Röder… - Photochemical & …, 2019 - Springer
Real-time surveillance of photodynamic therapy (PDT) has been desired by the research
community for a long time. The impact of the treatment is encoded in the phosphorescence …

Pulsed SILAC-based proteomic analysis unveils hypoxia-and serum starvation-induced de novo protein synthesis with PHD finger protein 14 (PHF14) as a hypoxia …

JE Park, SW Tse, G Xue, C Assisi, AS Maqueda… - …, 2019 - pmc.ncbi.nlm.nih.gov
Hypoxia is an environmental cue that is associated with multiple tumorigenic processes
such as immunosuppression, angiogenesis, cancer invasion, metastasis, drug resistance …

KSHV-encoded LANA protects the cellular replication machinery from hypoxia induced degradation

RK Singh, ZL Lamplugh, F Lang, Y Yuan… - PLoS …, 2019 - journals.plos.org
Kaposi's sarcoma associated herpesvirus (KSHV), like all herpesviruses maintains lifelong
persistence with its host genome in latently infected cells with only a small fraction of cells …

Identification of the cysteine protease legumain as a potential chronic hypoxia-specific multiple myeloma target gene

AS Clees, V Stolp, B Häupl, DC Fuhrmann, F Wempe… - Cells, 2022 - mdpi.com
Multiple myeloma (MM) is the second most common hematologic malignancy, which is
characterized by clonal proliferation of neoplastic plasma cells in the bone marrow. This …