The contribution of intrinsically disordered regions to protein function, cellular complexity, and human disease

MM Babu - Biochemical Society Transactions, 2016 - portlandpress.com
In the 1960s, Christian Anfinsen postulated that the unique three-dimensional structure of a
protein is determined by its amino acid sequence. This work laid the foundation for the …

Alternative splicing may not be the key to proteome complexity

ML Tress, F Abascal, A Valencia - Trends in biochemical sciences, 2017 - cell.com
Alternative splicing is commonly believed to be a major source of cellular protein diversity.
However, although many thousands of alternatively spliced transcripts are routinely detected …

Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue

SA Hardwick, W Hu, A Joglekar, L Fan, PG Collier… - Nature …, 2022 - nature.com
Single-nuclei RNA sequencing characterizes cell types at the gene level. However,
compared to single-cell approaches, many single-nuclei cDNAs are purely intronic, lack …

Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues

A Reyes, W Huber - Nucleic acids research, 2018 - academic.oup.com
Most human genes generate multiple transcript isoforms. The differential expression of these
isoforms can help specify cell types. Diverse transcript isoforms arise from the use of …

Alternative splicing and protein diversity: plants versus animals

S Chaudhary, W Khokhar, I Jabre, ASN Reddy… - Frontiers in plant …, 2019 - frontiersin.org
Plants, unlike animals, exhibit a very high degree of plasticity in their growth and
development and employ diverse strategies to cope with the variations during diurnal cycles …

The relationship between alternative splicing and proteomic complexity

BJ Blencowe - Trends in biochemical sciences, 2017 - cell.com
Tress and colleagues proposed that only a minor fraction of splice variants detected in
transcriptome profiling data are translated and, therefore, that most splice variants have little …

An analysis of tissue-specific alternative splicing at the protein level

JM Rodriguez, F Pozo, T Di Domenico… - PLoS Computational …, 2020 - journals.plos.org
The role of alternative splicing is one of the great unanswered questions in cellular biology.
There is strong evidence for alternative splicing at the transcript level, and transcriptomics …

Perspective on alternative splicing and proteome complexity in plants

S Chaudhary, I Jabre, ASN Reddy, D Staiger… - Trends in plant …, 2019 - cell.com
Alternative splicing (AS) generates multiple transcripts from the same gene, however, AS
contribution to proteome complexity remains elusive in plants. AS is prevalent under stress …

The ribosome-engaged landscape of alternative splicing

RJ Weatheritt, T Sterne-Weiler… - Nature structural & …, 2016 - nature.com
High-throughput RNA sequencing (RNA-seq) has revealed an enormous complexity of
alternative splicing (AS) across diverse cell and tissue types. However, it is currently …

APPRIS: selecting functionally important isoforms

JM Rodriguez, F Pozo, D Cerdán-Vélez… - Nucleic acids …, 2022 - academic.oup.com
Abstract APPRIS (https://appris. bioinfo. cnio. es) is a well-established database housing
annotations for protein isoforms for a range of species. APPRIS selects principal isoforms …