Re-evaluating retrosynthesis algorithms with syntheseus

K Maziarz, A Tripp, G Liu, M Stanley, S **e… - Faraday …, 2025 - pubs.rsc.org
Automated synthesis planning has recently re-emerged as a research area at the
intersection of chemistry and machine learning. Despite the appearance of steady progress …

Multistep retrosynthesis combining a disconnection aware triple transformer loop with a route penalty score guided tree search

D Kreutter, JL Reymond - Chemical Science, 2023 - pubs.rsc.org
Computer-aided synthesis planning (CASP) aims to automatically learn organic reactivity
from literature and perform retrosynthesis of unseen molecules. CASP systems must learn …

Retrogfn: Diverse and feasible retrosynthesis using gflownets

P Gaiński, M Koziarski, K Maziarz, M Segler… - arxiv preprint arxiv …, 2024 - arxiv.org
Single-step retrosynthesis aims to predict a set of reactions that lead to the creation of a
target molecule, which is a crucial task in molecular discovery. Although a target molecule …

Chimera: Accurate retrosynthesis prediction by ensembling models with diverse inductive biases

K Maziarz, G Liu, H Misztela, A Kornev… - arxiv preprint arxiv …, 2024 - arxiv.org
Planning and conducting chemical syntheses remains a major bottleneck in the discovery of
functional small molecules, and prevents fully leveraging generative AI for molecular inverse …

RetroOOD: understanding out-of-distribution generalization in retrosynthesis prediction

Y Yu, L Yuan, Y Wei, H Gao, F Wu, Z Wang… - Proceedings of the AAAI …, 2024 - ojs.aaai.org
Abstract Machine learning-assisted retrosynthesis prediction models have been gaining
widespread adoption, though their performances oftentimes degrade significantly when …

Retrosynthesis prediction revisited

H Tu, S Shorewala, T Ma, V Thost - NeurIPS 2022 AI for Science …, 2022 - openreview.net
Retrosynthesis is an important problem in chemistry and represents an interesting challenge
for AI since it involves predictions over sets of complex, molecular graph structures …

RETCL: A selection-based approach for retrosynthesis via contrastive learning

H Lee, S Ahn, SW Seo, YY Song, E Yang… - arxiv preprint arxiv …, 2021 - arxiv.org
Retrosynthesis, of which the goal is to find a set of reactants for synthesizing a target
product, is an emerging research area of deep learning. While the existing approaches have …

Single-step retrosynthesis prediction based on the identification of potential disconnection sites using molecular substructure fingerprints

H Hasic, T Ishida - Journal of Chemical Information and Modeling, 2021 - ACS Publications
The proper application of retrosynthesis to identify possible transformations for a given target
compound requires a lot of chemistry knowledge and experience. However, because the …

Chemoenzymatic multistep retrosynthesis with transformer loops

D Kreutter, JL Reymond - Chemical Science, 2024 - pubs.rsc.org
Integrating enzymatic reactions into computer-aided synthesis planning (CASP) should help
devise more selective, economical, and greener synthetic routes. Herein we report the triple …

RLSynC: Offline–Online Reinforcement Learning for Synthon Completion

FN Baker, Z Chen, D Adu-Ampratwum… - Journal of Chemical …, 2024 - ACS Publications
Retrosynthesis is the process of determining the set of reactant molecules that can react to
form a desired product. Semitemplate-based retrosynthesis methods, which imitate the …