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Beyond the human genome project: the age of complete human genome sequences and pangenome references
The Human Genome Project was an enormous accomplishment, providing a foundation for
countless explorations into the genetics and genomics of the human species. Yet for many …
countless explorations into the genetics and genomics of the human species. Yet for many …
Pangenome graphs and their applications in biodiversity genomics
S Secomandi, GR Gallo, R Rossi… - Nature Genetics, 2025 - nature.com
Complete datasets of genetic variants are key to biodiversity genomic studies. Long-read
sequencing technologies allow the routine assembly of highly contiguous, haplotype …
sequencing technologies allow the routine assembly of highly contiguous, haplotype …
A draft human pangenome reference
Abstract Here the Human Pangenome Reference Consortium presents a first draft of the
human pangenome reference. The pangenome contains 47 phased, diploid assemblies …
human pangenome reference. The pangenome contains 47 phased, diploid assemblies …
High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation
JA Gustafson, SB Gibson, N Damaraju… - Genome …, 2024 - genome.cshlp.org
Fewer than half of individuals with a suspected Mendelian or monogenic condition receive a
precise molecular diagnosis after comprehensive clinical genetic testing. Improvements in …
precise molecular diagnosis after comprehensive clinical genetic testing. Improvements in …
Recombination between heterologous human acrocentric chromosomes
The short arms of the human acrocentric chromosomes 13, 14, 15, 21 and 22 (SAACs) share
large homologous regions, including ribosomal DNA repeats and extended segmental …
large homologous regions, including ribosomal DNA repeats and extended segmental …
A super-pangenome of the North American wild grape species
Background Capturing the genetic diversity of wild relatives is crucial for improving crops
because wild species are valuable sources of agronomic traits that are essential to enhance …
because wild species are valuable sources of agronomic traits that are essential to enhance …
Grapevine pangenome facilitates trait genetics and genomic breeding
Z Liu, N Wang, Y Su, Q Long, Y Peng, L Shangguan… - Nature Genetics, 2024 - nature.com
Grapevine breeding is hindered by a limited understanding of the genetic basis of complex
agronomic traits. This study constructs a graph-based pangenome reference (Grapepan v …
agronomic traits. This study constructs a graph-based pangenome reference (Grapepan v …
Comparing methods for constructing and representing human pangenome graphs
Background As a single reference genome cannot possibly represent all the variation
present across human individuals, pangenome graphs have been introduced to incorporate …
present across human individuals, pangenome graphs have been introduced to incorporate …
Repeated plague infections across six generations of Neolithic Farmers
In the period between 5,300 and 4,900 calibrated years before present (cal. bp), populations
across large parts of Europe underwent a period of demographic decline,. However, the …
across large parts of Europe underwent a period of demographic decline,. However, the …
Recurrent evolution and selection shape structural diversity at the amylase locus
The adoption of agriculture triggered a rapid shift towards starch-rich diets in human
populations. Amylase genes facilitate starch digestion, and increased amylase copy number …
populations. Amylase genes facilitate starch digestion, and increased amylase copy number …