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[HTML][HTML] From molecules to genomic variations: Accelerating genome analysis via intelligent algorithms and architectures
We now need more than ever to make genome analysis more intelligent. We need to read,
analyze, and interpret our genomes not only quickly, but also accurately and efficiently …
analyze, and interpret our genomes not only quickly, but also accurately and efficiently …
GenStore: A high-performance in-storage processing system for genome sequence analysis
Read map** is a fundamental step in many genomics applications. It is used to identify
potential matches and differences between fragments (called reads) of a sequenced …
potential matches and differences between fragments (called reads) of a sequenced …
Efficient real-time selective genome sequencing on resource-constrained devices
Background Third-generation nanopore sequencers offer selective sequencing or “Read
Until” that allows genomic reads to be analyzed in real time and abandoned halfway if not …
Until” that allows genomic reads to be analyzed in real time and abandoned halfway if not …
SeGraM: A universal hardware accelerator for genomic sequence-to-graph and sequence-to-sequence map**
A critical step of genome sequence analysis is the map** of sequenced DNA fragments
(ie, reads) collected from an individual to a known linear reference genome sequence (ie …
(ie, reads) collected from an individual to a known linear reference genome sequence (ie …
Accelerated dynamic time war** on GPU for selective nanopore sequencing
H Sadasivan, D Stiffler, A Tirumala, J Israeli… - bioRxiv, 2023 - biorxiv.org
The design and supply of RT-PCR primers for accurate virus testing is a complex process.
The MinION is a revolutionary portable nanopore DNA sequencer that may be used to …
The MinION is a revolutionary portable nanopore DNA sequencer that may be used to …
[HTML][HTML] Rapid real-time squiggle classification for read until using rawmap
Abstract ReadUntil enables Oxford Nanopore Technology's (ONT) sequencers to selectively
sequence reads of target species in real-time. This enables efficient microbial enrichment for …
sequence reads of target species in real-time. This enables efficient microbial enrichment for …
GenStore: A High-Performance and Energy-Efficient In-Storage Computing System for Genome Sequence Analysis
Accelerated Systems for Portable DNA Sequencing
H Sadasivan - 2023 - deepblue.lib.umich.edu
The MinION is a revolutionary handheld DNA sequencer that is inexpensive, portable, and
can perform real-time sequencing. MinION is increasingly used in Precision Medicine …
can perform real-time sequencing. MinION is increasingly used in Precision Medicine …
Dash-cam: dynamic approximate search content addressable memory for genome classification
We propose a novel dynamic storage-based approximate search content addressable
memory (DASH-CAM) for computational genomics applications, particularly for identification …
memory (DASH-CAM) for computational genomics applications, particularly for identification …
Genpip: In-memory acceleration of genome analysis via tight integration of basecalling and read map**
Nanopore sequencing is a widely-used high-throughput genome sequencing technology
that can sequence long fragments of a genome into raw electrical signals at low cost …
that can sequence long fragments of a genome into raw electrical signals at low cost …