Abstract Ensembl (https://www. ensembl. org) has produced high-quality genomic resources
for vertebrates and model organisms for more than twenty years. During that time, our …

Livestock plays a central role in sustaining human livelihood in South Asia. There are
numerous and distinct livestock species in South Asian countries. Several of them have …

Domestic cattle have spread across the globe and inhabit variable and unpredictable
environments. They have been exposed to a plethora of selective pressures and have …

Abstract Background Structural variations (SVs) in individual genomes are major
determinants of complex traits, including adaptability to environmental variables. The …

A cattle pangenome representation was created based on the genome sequences of 898
cattle representing 57 breeds. The pangenome identified 83 Mb of sequence not found in …

Structural variants (SVs) are a major source of genetic and phenotypic variation, but remain
challenging to accurately type and are hence poorly characterized in most species. We …

Haplotype-resolved genome assemblies are important for understanding how combinations
of variants impact phenotypes. To date, these assemblies have been best created with …

Abstract The Bovine Pangenome Consortium (BPC) is an international collaboration
dedicated to the assembly of cattle genomes to develop a more complete representation of …

Chinese indicine cattle harbor a much higher genetic diversity compared with other
domestic cattle, but their genome architecture remains uninvestigated. Using PacBio HiFi …

Hybrid crops often exhibit increased yield and greater resilience, yet the genomic
mechanism (s) underlying hybrid vigor or heterosis remain unclear, hindering our ability to …