Physics-inspired structural representations for molecules and materials

F Musil, A Grisafi, AP Bartók, C Ortner… - Chemical …, 2021 - ACS Publications
The first step in the construction of a regression model or a data-driven analysis, aiming to
predict or elucidate the relationship between the atomic-scale structure of matter and its …

Quantum chemistry in the age of machine learning

PO Dral - The journal of physical chemistry letters, 2020 - ACS Publications
As the quantum chemistry (QC) community embraces machine learning (ML), the number of
new methods and applications based on the combination of QC and ML is surging. In this …

Dataset for quantum-mechanical exploration of conformers and solvent effects in large drug-like molecules

L Medrano Sandonas, D Van Rompaey, A Fallani… - Scientific Data, 2024 - nature.com
We here introduce the Aquamarine (AQM) dataset, an extensive quantum-mechanical (QM)
dataset that contains the structural and electronic information of 59,783 low-and high-energy …

QM7-X, a comprehensive dataset of quantum-mechanical properties spanning the chemical space of small organic molecules

J Hoja, L Medrano Sandonas, BG Ernst… - Scientific data, 2021 - nature.com
We introduce QM7-X, a comprehensive dataset of 42 physicochemical properties for≈ 4.2
million equilibrium and non-equilibrium structures of small organic molecules with up to …

[HTML][HTML] Predicting molecular dipole moments by combining atomic partial charges and atomic dipoles

M Veit, DM Wilkins, Y Yang, RA DiStasio… - The Journal of chemical …, 2020 - pubs.aip.org
The molecular dipole moment (μ) is a central quantity in chemistry. It is essential in
predicting infrared and sum-frequency generation spectra as well as induction and long …

Algorithmic Graph Theory, Reinforcement Learning and Game Theory in MD Simulations: From 3D Structures to Topological 2D-Molecular Graphs (2D-MolGraphs) …

S Bougueroua, M Bricage, Y Aboulfath, D Barth… - Molecules, 2023 - mdpi.com
This paper reviews graph-theory-based methods that were recently developed in our group
for post-processing molecular dynamics trajectories. We show that the use of algorithmic …

PiNNwall: Heterogeneous electrode models from integrating machine learning and atomistic simulation

T Dufils, L Knijff, Y Shao, C Zhang - Journal of Chemical Theory …, 2023 - ACS Publications
Electrochemical energy storage always involves the capacitive process. The prevailing
electrode model used in the molecular simulation of polarizable electrode–electrolyte …

Learning electron densities in the condensed phase

AM Lewis, A Grisafi, M Ceriotti… - Journal of chemical theory …, 2021 - ACS Publications
We introduce a local machine-learning method for predicting the electron densities of
periodic systems. The framework is based on a numerical, atom-centered auxiliary basis …

Tensorial properties via the neuroevolution potential framework: Fast simulation of infrared and Raman spectra

N Xu, P Rosander, C Schäfer… - Journal of Chemical …, 2024 - ACS Publications
Infrared and Raman spectroscopy are widely used for the characterization of gases, liquids,
and solids, as the spectra contain a wealth of information concerning, in particular, the …

Hybrid classical/machine-learning force fields for the accurate description of molecular condensed-phase systems

M Thürlemann, S Riniker - Chemical Science, 2023 - pubs.rsc.org
Electronic structure methods offer in principle accurate predictions of molecular properties,
however, their applicability is limited by computational costs. Empirical methods are …