Graph neural networks for materials science and chemistry

P Reiser, M Neubert, A Eberhard, L Torresi… - Communications …, 2022 - nature.com
Abstract Machine learning plays an increasingly important role in many areas of chemistry
and materials science, being used to predict materials properties, accelerate simulations …

Geometric deep learning on molecular representations

K Atz, F Grisoni, G Schneider - Nature Machine Intelligence, 2021 - nature.com
Geometric deep learning (GDL) is based on neural network architectures that incorporate
and process symmetry information. GDL bears promise for molecular modelling applications …

Equiformer: Equivariant graph attention transformer for 3d atomistic graphs

YL Liao, T Smidt - arxiv preprint arxiv:2206.11990, 2022 - arxiv.org
Despite their widespread success in various domains, Transformer networks have yet to
perform well across datasets in the domain of 3D atomistic graphs such as molecules even …

Structure-based drug design with geometric deep learning

C Isert, K Atz, G Schneider - Current Opinion in Structural Biology, 2023 - Elsevier
Abstract Structure-based drug design uses three-dimensional geometric information of
macromolecules, such as proteins or nucleic acids, to identify suitable ligands. Geometric …

Artificial intelligence for science in quantum, atomistic, and continuum systems

X Zhang, L Wang, J Helwig, Y Luo, C Fu, Y **e… - arxiv preprint arxiv …, 2023 - arxiv.org
Advances in artificial intelligence (AI) are fueling a new paradigm of discoveries in natural
sciences. Today, AI has started to advance natural sciences by improving, accelerating, and …

General framework for E (3)-equivariant neural network representation of density functional theory Hamiltonian

X Gong, H Li, N Zou, R Xu, W Duan, Y Xu - Nature Communications, 2023 - nature.com
The combination of deep learning and ab initio calculation has shown great promise in
revolutionizing future scientific research, but how to design neural network models …

Equiformerv2: Improved equivariant transformer for scaling to higher-degree representations

YL Liao, B Wood, A Das, T Smidt - arxiv preprint arxiv:2306.12059, 2023 - arxiv.org
Equivariant Transformers such as Equiformer have demonstrated the efficacy of applying
Transformers to the domain of 3D atomistic systems. However, they are still limited to small …

Deep-learning density functional theory Hamiltonian for efficient ab initio electronic-structure calculation

H Li, Z Wang, N Zou, M Ye, R Xu, X Gong… - Nature Computational …, 2022 - nature.com
The marriage of density functional theory (DFT) and deep-learning methods has the
potential to revolutionize modern computational materials science. Here we develop a deep …

Geometric clifford algebra networks

D Ruhe, JK Gupta, S De Keninck… - International …, 2023 - proceedings.mlr.press
Abstract We propose Geometric Clifford Algebra Networks (GCANs) for modeling dynamical
systems. GCANs are based on symmetry group transformations using geometric (Clifford) …

Efficient and equivariant graph networks for predicting quantum Hamiltonian

H Yu, Z Xu, X Qian, X Qian, S Ji - … Conference on Machine …, 2023 - proceedings.mlr.press
We consider the prediction of the Hamiltonian matrix, which finds use in quantum chemistry
and condensed matter physics. Efficiency and equivariance are two important, but conflicting …