Induced pluripotent stem cells (iPSCs): molecular mechanisms of induction and applications

J Cerneckis, H Cai, Y Shi - Signal Transduction and Targeted Therapy, 2024 - nature.com
The induced pluripotent stem cell (iPSC) technology has transformed in vitro research and
holds great promise to advance regenerative medicine. iPSCs have the capacity for an …

Chromatin accessibility profiling by ATAC-seq

FC Grandi, H Modi, L Kampman, MR Corces - Nature protocols, 2022 - nature.com
The assay for transposase-accessible chromatin using sequencing (ATAC-seq) provides a
simple and scalable way to detect the unique chromatin landscape associated with a cell …

The AP-1 transcriptional complex: Local switch or remote command?

F Bejjani, E Evanno, K Zibara, M Piechaczyk… - … et Biophysica Acta (BBA …, 2019 - Elsevier
The ubiquitous family of AP-1 dimeric transcription complexes is involved in virtually all
cellular and physiological functions. It is paramount for cells to reprogram gene expression …

Chromatin Velocity reveals epigenetic dynamics by single-cell profiling of heterochromatin and euchromatin

M Tedesco, F Giannese, D Lazarević, V Giansanti… - Nature …, 2022 - nature.com
Recent efforts have succeeded in surveying open chromatin at the single-cell level, but high-
throughput, single-cell assessment of heterochromatin and its underlying genomic …

Glis1 facilitates induction of pluripotency via an epigenome–metabolome–epigenome signalling cascade

L Li, K Chen, T Wang, Y Wu, G **ng, M Chen… - Nature …, 2020 - nature.com
Somatic cell reprogramming provides insight into basic principles of cell fate determination,
which remain poorly understood. Here we show that the transcription factor Glis1 induces …

Identifying transposable element expression dynamics and heterogeneity during development at the single-cell level with a processing pipeline scTE

J He, IA Babarinde, L Sun, S Xu, R Chen, J Shi… - Nature …, 2021 - nature.com
Transposable elements (TEs) make up a majority of a typical eukaryote's genome, and
contribute to cell heterogeneity in unclear ways. Single-cell sequencing technologies are …

Highly cooperative chimeric super-SOX induces naive pluripotency across species

CM MacCarthy, G Wu, V Malik, Y Menuchin-Lasowski… - Cell Stem Cell, 2024 - cell.com
Our understanding of pluripotency remains limited: iPSC generation has only been
established for a few model species, pluripotent stem cell lines exhibit inconsistent …

Dux activates metabolism-lactylation-MET network during early iPSC reprogramming with Brg1 as the histone lactylation reader

X Hu, X Huang, Y Yang, Y Sun, Y Zhao… - Nucleic acids …, 2024 - academic.oup.com
The process of induced pluripotent stem cells (iPSCs) reprogramming involves several
crucial events, including the mesenchymal-epithelial transition (MET), activation of …

KLF4 is involved in the organization and regulation of pluripotency-associated three-dimensional enhancer networks

DC Di Giammartino, A Kloetgen, A Polyzos, Y Liu… - Nature cell …, 2019 - nature.com
Cell fate transitions are accompanied by global transcriptional, epigenetic and topological
changes driven by transcription factors, as is exemplified by reprogramming somatic cells to …

Mechanisms, pathways and strategies for rejuvenation through epigenetic reprogramming

A Cipriano, M Moqri, SY Maybury-Lewis… - Nature aging, 2024 - nature.com
Over the past decade, there has been a dramatic increase in efforts to ameliorate aging and
the diseases it causes, with transient expression of nuclear reprogramming factors recently …