Phylogenetic perspectives on reef fish functional traits

SR Floeter, MG Bender, AC Siqueira… - Biological …, 2018 - Wiley Online Library
Functional traits have been fundamental to the evolution and diversification of entire fish
lineages on coral reefs. Yet their relationship with the processes promoting speciation …

A glimpse on the pattern of rodent diversification: a phylogenetic approach

PH Fabre, L Hautier, D Dimitrov, EJ P Douzery - BMC evolutionary biology, 2012 - Springer
Background Development of phylogenetic methods that do not rely on fossils for the study of
evolutionary processes through time have revolutionized the field of evolutionary biology …

The influence of gene flow on species tree estimation: a simulation study

AD Leaché, RB Harris, B Rannala, Z Yang - Systematic biology, 2014 - academic.oup.com
Gene flow among populations or species and incomplete lineage sorting (ILS) are two
evolutionary processes responsible for generating gene tree discordance and therefore …

Decline of a biome: evolution, contraction, fragmentation, extinction and invasion of the Australian mesic zone biota

M Byrne, DA Steane, L Joseph, DK Yeates… - Journal of …, 2011 - Wiley Online Library
Aim The mesic biome, encompassing both rain forest and open sclerophyllous forests, is
central to understanding the evolution of Australia's terrestrial biota and has long been …

Multiple geographic origins of commensalism and complex dispersal history of black rats

KP Aplin, H Suzuki, AA Chinen, RT Chesser… - PloS one, 2011 - journals.plos.org
The Black Rat (Rattus rattus) spread out of Asia to become one of the world's worst
agricultural and urban pests, and a reservoir or vector of numerous zoonotic diseases …

StarBeast3: adaptive parallelized Bayesian inference under the multispecies coalescent

J Douglas, CL Jiménez-Silva, R Bouckaert - Systematic Biology, 2022 - academic.oup.com
As genomic sequence data become increasingly available, inferring the phylogeny of the
species as that of concatenated genomic data can be enticing. However, this approach …

Ecological opportunity and incumbency in the diversification of repeated continental colonizations by muroid rodents

JJ Schenk, KC Rowe, SJ Steppan - Systematic biology, 2013 - academic.oup.com
Why some clades are more species-rich than others is a central question in macroevolution.
Most hypotheses explaining exceptionally diverse clades involve the emergence of an …

Cryptic diversity begets challenges and opportunities in biodiversity research

R Cheng, A Luo, M Orr, D Ge, Z Hou, Y Qu… - Integrative …, 2025 - Wiley Online Library
How many species of life are there on Earth? This is a question that we want to know but
cannot yet answer. Some scholars speculate that the number of species may reach 2.2 …

Single-locus species delimitation: a test of the mixed Yule–coalescent model, with an empirical application to Philippine round-leaf bats

JA Esselstyn, BJ Evans, JL Sedlock… - … of the Royal …, 2012 - royalsocietypublishing.org
Prospects for a comprehensive inventory of global biodiversity would be greatly improved by
automating methods of species delimitation. The general mixed Yule–coalescent (GMYC) …

Allomaternal care, life history and brain size evolution in mammals

K Isler, CP van Schaik - Journal of human evolution, 2012 - Elsevier
Humans stand out among the apes by having both an extremely large brain and a relatively
high reproductive output, which has been proposed to be a consequence of cooperative …