[HTML][HTML] Dwell time symmetry in random walks and molecular motors

M Lindén, M Wallin - Biophysical Journal, 2007 - cell.com
The statistics of steps and dwell times in reversible molecular motors differ from those of
cycle completion in enzyme kinetics. The reason is that a step is only one of several …

Transitions in the ergodicity of subrecoil-laser-cooled gases

E Barkai, G Radons, T Akimoto - Physical review letters, 2021 - APS
With subrecoil-laser-cooled atoms, one may reach nanokelvin temperatures while the
ergodic properties of these systems do not follow usual statistical laws. Instead, due to an …

Statistics of the number of renewals, occupation times, and correlation in ordinary, equilibrium, and aging alternating renewal processes

T Akimoto - Physical Review E, 2023 - APS
The renewal process is a point process where an interevent time between successive
renewals is an independent and identically distributed random variable. Alternating renewal …

A queueing approach to multi-site enzyme kinetics

P Hochendoner, C Ogle, WH Mather - Interface focus, 2014 - royalsocietypublishing.org
Multi-site enzymes, defined as where multiple substrate molecules can bind simultaneously
to the same enzyme molecule, play a key role in a number of biological networks, with the …

Step** and crowding of molecular motors: statistical kinetics from an exclusion process perspective

L Ciandrini, MC Romano, A Parmeggiani - Biophysical journal, 2014 - cell.com
Motor enzymes are remarkable molecular machines that use the energy derived from the
hydrolysis of a nucleoside triphosphate to generate mechanical movement, achieved …

Dynamics of non-Markovian exclusion processes

D Khoromskaia, RJ Harris… - Journal of Statistical …, 2014 - iopscience.iop.org
Driven diffusive systems are often used as simple discrete models of collective transport
phenomena in physics, biology or social sciences. Restricting attention to one-dimensional …

[HTML][HTML] Gas of sub-recoiled laser cooled atoms described by infinite ergodic theory

E Barkai, G Radons, T Akimoto - The Journal of Chemical Physics, 2022 - pubs.aip.org
The velocity distribution of a classical gas of atoms in thermal equilibrium is the normal
Maxwell distribution. It is well known that for sub-recoiled laser cooled atoms, Lévy statistics …

Waiting time distributions for clusters of complex molecules

R Thul, M Falcke - Europhysics Letters, 2007 - iopscience.iop.org
Waiting time distributions are in the core of theories for a large variety of subjects ranging
from the analysis of patch clamp records to stochastic excitable systems. Here, we present a …

Renewal-reward process formulation of motor protein dynamics

A Krishnan, BI Epureanu - Bulletin of mathematical biology, 2011 - Springer
Renewal-reward processes are used to provide a framework for the mathematical
description of single-molecule bead-motor assays for processive motor proteins. The …

Driven lattice gases: models for intracellular transport

P Pierobon - 2006 - edoc.ub.uni-muenchen.de
Intracellular transport phenomena, such as kinesins and myosins moving along cytoskeletal
filaments or ribosomes along messenger RNA, can be modeled by one-dimensional driven …