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Theory and modeling of RNA structure and interactions with metal ions and small molecules
In addition to continuous rapid progress in RNA structure determination, probing, and
biophysical studies, the past decade has seen remarkable advances in the development of …
biophysical studies, the past decade has seen remarkable advances in the development of …
Discovery of RNA-targeted small molecules through the merging of experimental and computational technologies
EC Morishita - Expert Opinion on Drug Discovery, 2023 - Taylor & Francis
Introduction The field of RNA-targeted small molecules is rapidly evolving, owing to the
advances in experimental and computational technologies. With the identification of several …
advances in experimental and computational technologies. With the identification of several …
CompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure prediction
T Puton, LP Kozlowski, KM Rother… - Nucleic acids …, 2013 - academic.oup.com
We present a continuous benchmarking approach for the assessment of RNA secondary
structure prediction methods implemented in the CompaRNA web server. As of 3 October …
structure prediction methods implemented in the CompaRNA web server. As of 3 October …
IsRNA1: De Novo Prediction and Blind Screening of RNA 3D Structures
Modeling structures and functions of large ribonucleic acid (RNAs) especially with
complicated topologies is highly challenging due to the inefficiency of large conformational …
complicated topologies is highly challenging due to the inefficiency of large conformational …
Coarse-grained HiRE-RNA model for ab initio RNA folding beyond simple molecules, including noncanonical and multiple base pairings
T Cragnolini, Y Laurin, P Derreumaux… - Journal of chemical …, 2015 - ACS Publications
HiRE-RNA is a coarse-grained model for RNA structure prediction and the dynamical study
of RNA folding. Using a reduced set of particles and detailed interactions accounting for …
of RNA folding. Using a reduced set of particles and detailed interactions accounting for …
Predicting RNA secondary structure via adaptive deep recurrent neural networks with energy-based filter
Background RNA secondary structure prediction is an important issue in structural
bioinformatics, and RNA pseudoknotted secondary structure prediction represents an NP …
bioinformatics, and RNA pseudoknotted secondary structure prediction represents an NP …
Automated 3D RNA structure prediction using the RNAComposer method for riboswitches1
Understanding the numerous functions of RNAs depends critically on the knowledge of their
three-dimensional (3D) structure. In contrast to the protein field, a much smaller number of …
three-dimensional (3D) structure. In contrast to the protein field, a much smaller number of …
Mutation in the 3'untranslated region of APP as a genetic determinant of cerebral amyloid angiopathy
Aβ-related cerebral amyloid angiopathy (CAA) is a major cause of primary non-traumatic
brain hemorrhage. In families with an early onset of the disease, CAA can be due to amyloid …
brain hemorrhage. In families with an early onset of the disease, CAA can be due to amyloid …
Identification and comparative analysis of the CIPK gene family and characterization of the cold stress response in the woody plant Prunus mume
P Li, T Zheng, L Li, X Zhuo, L Jiang, J Wang, T Cheng… - PeerJ, 2019 - peerj.com
Prunus mume is an important ornamental woody plant that grows in tropical and subtropical
regions. Freezing stress can adversely impact plant productivity and limit the expansion of …
regions. Freezing stress can adversely impact plant productivity and limit the expansion of …
FMRP regulates actin filament organization via the armadillo protein p0071
A Nolze, J Schneider, R Keil, M Lederer, S Hüttelmaier… - Rna, 2013 - rnajournal.cshlp.org
Loss of fragile X mental retardation protein (FMRP) causes synaptic dysfunction and
intellectual disability. FMRP is an RNA-binding protein that controls the translation or …
intellectual disability. FMRP is an RNA-binding protein that controls the translation or …