Water in nanopores and biological channels: a molecular simulation perspective

CI Lynch, S Rao, MSP Sansom - Chemical reviews, 2020 - ACS Publications
This Review explores the dynamic behavior of water within nanopores and biological
channels in lipid bilayer membranes. We focus on molecular simulation studies, alongside …

Water: A tale of two liquids

P Gallo, K Amann-Winkel, CA Angell… - Chemical …, 2016 - ACS Publications
Water is the most abundant liquid on earth and also the substance with the largest number
of anomalies in its properties. It is a prerequisite for life and as such a most important subject …

Systematic comparison of the structural and dynamic properties of commonly used water models for molecular dynamics simulations

SP Kadaoluwa Pathirannahalage… - Journal of chemical …, 2021 - ACS Publications
Water is a unique solvent that is ubiquitous in biology and present in a variety of solutions,
mixtures, and materials settings. It therefore forms the basis for all molecular dynamics …

How van der Waals interactions determine the unique properties of water

T Morawietz, A Singraber, C Dellago… - Proceedings of the …, 2016 - pnas.org
Whereas the interactions between water molecules are dominated by strongly directional
hydrogen bonds (HBs), it was recently proposed that relatively weak, isotropic van der …

Simulating water with rigid non-polarizable models: a general perspective

C Vega, JLF Abascal - Physical Chemistry Chemical Physics, 2011 - pubs.rsc.org
Over the last forty years many computer simulations of water have been performed using
rigid non-polarizable models. Since these models describe water interactions in an …

A general purpose model for the condensed phases of water: TIP4P/2005

JLF Abascal, C Vega - The Journal of chemical physics, 2005 - pubs.aip.org
A potential model intended to be a general purpose model for the condensed phases of
water is presented. TIP4P/2005 is a rigid four site model which consists of three fixed point …

Water modeled as an intermediate element between carbon and silicon

V Molinero, EB Moore - The Journal of Physical Chemistry B, 2009 - ACS Publications
Water and silicon are chemically dissimilar substances with common physical properties.
Their liquids display a temperature of maximum density, increased diffusivity on …

Competing quantum effects in the dynamics of a flexible water model

S Habershon, TE Markland… - The journal of chemical …, 2009 - pubs.aip.org
Numerous studies have identified large quantum mechanical effects in the dynamics of
liquid water. In this paper, we suggest that these effects may have been overestimated due …

Molecular simulation of water in carbon nanotubes

A Alexiadis, S Kassinos - Chemical reviews, 2008 - ACS Publications
According to Monthioux and Kuznetsov, 1 the first mention of carbon filaments was reported
in 18892 in a patent proposing the use of such filaments in light bulbs (interestingly enough …

The melting point of ice Ih for common water models calculated from direct coexistence of the solid-liquid interface

R García Fernández, JLF Abascal… - The Journal of chemical …, 2006 - pubs.aip.org
In this work we present an implementation for the calculation of the melting point of ice I h
from direct coexistence of the solid-liquid interface. We use molecular dynamics simulations …