Metaheuristics in large-scale global continues optimization: A survey
Metaheuristic algorithms are extensively recognized as effective approaches for solving high-
dimensional optimization problems. These algorithms provide effective tools with important …
dimensional optimization problems. These algorithms provide effective tools with important …
Building Digital Twins for Cardiovascular Health: from principles to clinical impact
The past several decades have seen rapid advances in diagnosis and treatment of
cardiovascular diseases and stroke, enabled by technological breakthroughs in imaging …
cardiovascular diseases and stroke, enabled by technological breakthroughs in imaging …
Benchmarking optimization methods for parameter estimation in large kinetic models
Motivation Kinetic models contain unknown parameters that are estimated by optimizing the
fit to experimental data. This task can be computationally challenging due to the presence of …
fit to experimental data. This task can be computationally challenging due to the presence of …
Reverse engineering and identification in systems biology: strategies, perspectives and challenges
The interplay of mathematical modelling with experiments is one of the central elements in
systems biology. The aim of reverse engineering is to infer, analyse and understand …
systems biology. The aim of reverse engineering is to infer, analyse and understand …
[HTML][HTML] Metabolomics and systems pharmacology: why and how to model the human metabolic network for drug discovery
Highlights•We now have metabolic network models; the metabolome is represented by their
nodes.•Metabolite levels are sensitive to changes in enzyme activities.•Drugs hitchhike on …
nodes.•Metabolite levels are sensitive to changes in enzyme activities.•Drugs hitchhike on …
MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics
Background Optimization is the key to solving many problems in computational biology.
Global optimization methods, which provide a robust methodology, and metaheuristics in …
Global optimization methods, which provide a robust methodology, and metaheuristics in …
Mathematical and computational modeling in complex biological systems
The biological process and molecular functions involved in the cancer progression remain
difficult to understand for biologists and clinical doctors. Recent developments in high …
difficult to understand for biologists and clinical doctors. Recent developments in high …
Hybrid metaheuristics and multi-agent systems for solving optimization problems: A review of frameworks and a comparative analysis
This article presents a review and a comparative analysis between frameworks for solving
optimization problems using metaheuristics. The aim is to identify both the desirable …
optimization problems using metaheuristics. The aim is to identify both the desirable …
Optimal enzyme utilization suggests that concentrations and thermodynamics determine binding mechanisms and enzyme saturations
Deciphering the metabolic functions of organisms requires understanding the dynamic
responses of living cells upon genetic and environmental perturbations, which in turn can be …
responses of living cells upon genetic and environmental perturbations, which in turn can be …
Comprehensive review of models and methods for inferences in bio-chemical reaction networks
The key processes in biological and chemical systems are described by networks of
chemical reactions. From molecular biology to biotechnology applications, computational …
chemical reactions. From molecular biology to biotechnology applications, computational …