Using nuclear gene data for plant phylogenetics: Progress and prospects II. Next‐gen approaches

EA Zimmer, J Wen - Journal of Systematics and Evolution, 2015 - Wiley Online Library
Single and low copy nuclear genes offer a larger number of, and more rapidly evolving,
characters than the chloroplast and nuclear ribosomal gene sequences that have dominated …

Field guide to plant model systems

C Chang, JL Bowman, EM Meyerowitz - Cell, 2016 - cell.com
For the past several decades, advances in plant development, physiology, cell biology, and
genetics have relied heavily on the model (or reference) plant Arabidopsis thaliana …

The genome of homosporous maidenhair fern sheds light on the euphyllophyte evolution and defences

Y Fang, X Qin, Q Liao, R Du, X Luo, Q Zhou, Z Li… - Nature Plants, 2022 - nature.com
Euphyllophytes encompass almost all extant plants, including two sister clades, ferns and
seed plants. Decoding genomes of ferns is the key to deep insight into the origin of …

Draft genome of the living fossil Ginkgo biloba

R Guan, Y Zhao, HE Zhang, G Fan, X Liu, W Zhou… - …, 2016 - academic.oup.com
Abstract Background Ginkgo biloba L.(Ginkgoaceae) is one of the most distinctive plants. It
possesses a suite of fascinating characteristics including a large genome, outstanding …

Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database

A Bissett, A Fitzgerald, T Meintjes, PM Mele, F Reith… - GigaScience, 2016 - Springer
Background Microbial inhabitants of soils are important to ecosystem and planetary
functions, yet there are large gaps in our knowledge of their diversity and ecology. The …

Genome evolution of ferns: evidence for relative stasis of genome size across the fern phylogeny

J Clark, O Hidalgo, J Pellicer, H Liu… - New …, 2016 - Wiley Online Library
The genome evolution of ferns has been considered to be relatively static compared with
angiosperms. In this study, we analyse genome size data and chromosome numbers in a …

The C-Fern (Ceratopteris richardii) genome: insights into plant genome evolution with the first partial homosporous fern genome assembly

DB Marchant, EB Sessa, PG Wolf, K Heo… - Scientific reports, 2019 - nature.com
Ferns are notorious for possessing large genomes and numerous chromosomes. Despite
decades of speculation, the processes underlying the expansive genomes of ferns are …

Charting the genomic landscape of seed-free plants

P Szövényi, A Gunadi, FW Li - Nature Plants, 2021 - nature.com
During the past few years several high-quality genomes has been published from
Charophyte algae, bryophytes, lycophytes and ferns. These genomes have not only …

The first homosporous lycophyte genome revealed the association between the recent dynamic accumulation of LTR-RTs and genome size variation

JG Yu, JY Tang, R Wei, MF Lan, RC **ang… - Plant Molecular …, 2023 - Springer
The contrasting genome size between homosporous and heterosporous plants is
fascinating. Different from the heterosporous seed plants and mainly homosporous ferns, the …

Complete mitochondrial genomes from the ferns Ophioglossum californicum and Psilotum nudum are highly repetitive with the largest organellar introns

W Guo, A Zhu, W Fan, JP Mower - New Phytologist, 2017 - Wiley Online Library
Currently, complete mitochondrial genomes (mitogenomes) are available from all major land
plant lineages except ferns. Sequencing of fern mitogenomes could shed light on the major …