[HTML][HTML] Advances in protein structure prediction and design

B Kuhlman, P Bradley - Nature reviews molecular cell biology, 2019 - nature.com
The prediction of protein three-dimensional structure from amino acid sequence has been a
grand challenge problem in computational biophysics for decades, owing to its intrinsic …

Machine learning for functional protein design

P Notin, N Rollins, Y Gal, C Sander, D Marks - Nature biotechnology, 2024 - nature.com
Recent breakthroughs in AI coupled with the rapid accumulation of protein sequence and
structure data have radically transformed computational protein design. New methods …

Co-optimization of therapeutic antibody affinity and specificity using machine learning models that generalize to novel mutational space

EK Makowski, PC Kinnunen, J Huang, L Wu… - Nature …, 2022 - nature.com
Therapeutic antibody development requires selection and engineering of molecules with
high affinity and other drug-like biophysical properties. Co-optimization of multiple antibody …

Multifunctional CRISPR-Cas9 with engineered immunosilenced human T cell epitopes

SR Ferdosi, R Ewaisha, F Moghadam, S Krishna… - Nature …, 2019 - nature.com
The CRISPR-Cas9 system has raised hopes for develo** personalized gene therapies for
complex diseases. Its application for genetic and epigenetic therapies in humans raises …

Antibody directed enzyme prodrug therapy (ADEPT): trials and tribulations

SK Sharma, KD Bagshawe - Advanced drug delivery reviews, 2017 - Elsevier
Antibody directed enzyme prodrug therapy has the potential to be an effective therapy for
most common solid cancers. Clinical studies with CPG2 system have shown the feasibility of …

Immunity to CRISPR Cas9 and Cas12a therapeutics

WL Chew - Wiley Interdisciplinary Reviews: Systems Biology …, 2018 - Wiley Online Library
Genome‐editing therapeutics are poised to treat human diseases. As we enter clinical trials
with the most promising CRISPR‐Cas9 and CRISPR‐Cas12a (Cpf1) modalities, the risks …

Synthetic transcription factor engineering for cell and gene therapy

B Bhatt, P García-Díaz, GW Foight - Trends in Biotechnology, 2024 - cell.com
Synthetic transcription factors (synTFs) that control beneficial transgene expression are an
important method to increase the safety and efficacy of cell and gene therapy. Reliance on …

[HTML][HTML] Deimmunization of protein therapeutics–Recent advances in experimental and computational epitope prediction and deletion

LV Zinsli, N Stierlin, MJ Loessner… - Computational and …, 2021 - Elsevier
Biotherapeutics, and antimicrobial proteins in particular, are of increasing interest for human
medicine. An important challenge in the development of such therapeutics is their potential …

Activation of prodrugs by NIR‐triggered release of exogenous enzymes for locoregional chemo‐photothermal therapy

L Cheng, F Zhang, S Wang, X Pan… - Angewandte Chemie …, 2019 - Wiley Online Library
Enzymes have been used to direct the conversion of prodrugs in cancer therapy. However,
non‐specific distribution of endogenous enzymes seriously hinders their bioapplications …

Discovery-stage identification of drug-like antibodies using emerging experimental and computational methods

EK Makowski, L Wu, P Gupta, PM Tessier - MAbs, 2021 - Taylor & Francis
There is intense and widespread interest in develo** monoclonal antibodies as
therapeutic agents to treat diverse human disorders. During early-stage antibody discovery …