Lake sedimentary DNA research on past terrestrial and aquatic biodiversity: Overview and recommendations

E Capo, C Giguet-Covex, A Rouillard, K Nota… - Quaternary, 2021 - mdpi.com
The use of lake sedimentary DNA to track the long-term changes in both terrestrial and
aquatic biota is a rapidly advancing field in paleoecological research. Although largely …

Daphnia as a versatile model system in ecology and evolution

D Ebert - EvoDevo, 2022 - Springer
Water fleas of the genus Daphnia have been a model system for hundreds of years and is
among the best studied ecological model organisms to date. Daphnia are planktonic …

Environmental DNA time series in ecology

M Balint, M Pfenninger, HP Grossart, P Taberlet… - Trends in Ecology & …, 2018 - cell.com
Ecological communities change in time and space, but long-term dynamics at the century-to-
millennia scale are poorly documented due to lack of relevant data sets. Nevertheless …

Investigating the effects of anthropogenic stressors on lake biota using sedimentary DNA

C Barouillet, ME Monchamp, S Bertilsson… - Freshwater …, 2023 - pub.epsilon.slu.se
Analyses of sedimentary DNA (sedDNA) have increased exponentially over the last decade
and hold great potential to study the effects of anthropogenic stressors on lake biota over …

Sediment archives reveal irreversible shifts in plankton communities after World War II and agricultural pollution

R Siano, M Lassudrie, P Cuzin, N Briant, V Loizeau… - Current Biology, 2021 - cell.com
To evaluate the stability and resilience 1 of coastal ecosystem communities to perturbations
that occurred during the Anthropocene, 2 pre-industrial biodiversity baselines inferred from …

Anthropogenic impact on the historical phytoplankton community of Lake Constance reconstructed by multimarker analysis of sediment‐core environmental DNA

A Ibrahim, E Capo, M Wessels, I Martin… - Molecular …, 2021 - Wiley Online Library
During the 20th century, many lakes in the Northern Hemisphere were affected by
increasing human population and urbanization along their shorelines and catchment …

Combining High-Throughput Sequencing of sedaDNA and Traditional Paleolimnological Techniques To Infer Historical Trends in Cyanobacterial Communities

TJ Tse, LE Doig, S Tang, X Zhang, W Sun… - … science & technology, 2018 - ACS Publications
Freshwaters worldwide are under increasing pressure from anthropogenic activities and
changing climate. Unfortunately, many inland waters lack sufficient long-term monitoring to …

Effects of temperature and oxygen on cyanobacterial DNA preservation in sediments: A comparison study of major taxa

HS Mejbel, W Dodsworth, FR Pick - Environmental DNA, 2022 - Wiley Online Library
The analysis of sediment DNA has emerged as a promising alternative to classical
paleolimnological proxies, which typically rely on hard fossils to reconstruct environmental …

An integrative paleolimnological approach for studying evolutionary processes

M Cuenca-Cambronero, CJ Courtney-Mustaphi… - Trends in ecology & …, 2022 - cell.com
The field of paleolimnology has made tremendous progress in reconstructing past biotic and
abiotic environmental conditions of aquatic ecosystems based on sediment records. This …

Sedimentary DNA can reveal the past population dynamics of a pelagic copepod

K Nakane, X Liu, H Doi, G Dur, M Kuwae… - Freshwater …, 2023 - Wiley Online Library
Copepods play a key trophic role as secondary producers, transferring primary production to
higher trophic levels such as fish. Copepod production contributes significantly to successful …