The post-GWAS era: from association to function

MD Gallagher, AS Chen-Plotkin - The American Journal of Human …, 2018 - cell.com
During the past 12 years, genome-wide association studies (GWASs) have uncovered
thousands of genetic variants that influence risk for complex human traits and diseases. Yet …

A review of feature selection techniques in bioinformatics

Y Saeys, I Inza, P Larranaga - bioinformatics, 2007 - academic.oup.com
Feature selection techniques have become an apparent need in many bioinformatics
applications. In addition to the large pool of techniques that have already been developed in …

Causal relationship between gut microbiota and cancers: a two-sample Mendelian randomisation study

Y Long, L Tang, Y Zhou, S Zhao, H Zhu - BMC medicine, 2023 - Springer
Background Evidence from observational studies and clinical trials suggests that the gut
microbiota is associated with cancer. However, the causal association between gut …

Second-generation PLINK: rising to the challenge of larger and richer datasets

CC Chang, CC Chow, LCAM Tellier, S Vattikuti… - …, 2015 - academic.oup.com
Background PLINK 1 is a widely used open-source C/C++ toolset for genome-wide
association studies (GWAS) and research in population genetics. However, the steady …

Haploview: analysis and visualization of LD and haplotype maps

JC Barrett, B Fry, J Maller, MJ Daly - Bioinformatics, 2005 - academic.oup.com
Research over the last few years has revealed significant haplotype structure in the human
genome. The characterization of these patterns, particularly in the context of medical genetic …

Initial sequencing and comparative analysis of the mouse genome

European Bioinformatics Institute: Birney Ewan 3 … - Nature, 2002 - nature.com
The sequence of the mouse genome is a key informational tool for understanding the
contents of the human genome and a key experimental tool for biomedical research. Here …

Sharing clusters among related groups: Hierarchical Dirichlet processes

Y Teh, M Jordan, M Beal, D Blei - Advances in neural …, 2004 - proceedings.neurips.cc
We propose the hierarchical Dirichlet process (HDP), a nonparametric Bayesian model for
clustering problems involving multiple groups of data. Each group of data is modeled with a …

Status and prospects of genome‐wide association studies in plants

L Tibbs Cortes, Z Zhang, J Yu - The plant genome, 2021 - Wiley Online Library
Genome‐wide association studies (GWAS) have developed into a powerful and ubiquitous
tool for the investigation of complex traits. In large part, this was fueled by advances in …

Springer series in statistics

P Bickel, P Diggle, S Fienberg, U Gather, I Olkin… - Principles and Theory …, 2009 - Springer
The idea for this book came from the time the authors spent at the Statistics and Applied
Mathematical Sciences Institute (SAMSI) in Research Triangle Park in North Carolina …

The international HapMap project

RA Gibbs, JW Belmont, P Hardenbol, TD Willis, FL Yu… - 2003 - deepblue.lib.umich.edu
The goal of the International HapMap Project is to determine the common patterns of DNA
sequence variation in the human genome and to make this information freely available in …