Beyond mass spectrometry, the next step in proteomics

W Timp, G Timp - Science Advances, 2020 - science.org
Proteins can be the root cause of a disease, and they can be used to cure it. The need to
identify these critical actors was recognized early (1951) by Sanger; the first biopolymer …

A high-stringency blueprint of the human proteome

S Adhikari, EC Nice, EW Deutsch, L Lane… - Nature …, 2020 - nature.com
Abstract The Human Proteome Organization (HUPO) launched the Human Proteome Project
(HPP) in 2010, creating an international framework for global collaboration, data sharing …

The ProteomeXchange consortium in 2020: enabling 'big data'approaches in proteomics

EW Deutsch, N Bandeira, V Sharma… - Nucleic acids …, 2020 - academic.oup.com
The ProteomeXchange (PX) consortium of proteomics resources (http://www.
proteomexchange. org) has standardized data submission and dissemination of mass …

A deep proteome and transcriptome abundance atlas of 29 healthy human tissues

D Wang, B Eraslan, T Wieland, B Hallström… - Molecular systems …, 2019 - embopress.org
Abstract Genome‐, transcriptome‐and proteome‐wide measurements provide insights into
how biological systems are regulated. However, fundamental aspects relating to which …

A genome-wide transcriptomic analysis of protein-coding genes in human blood cells

M Uhlen, MJ Karlsson, W Zhong, A Tebani, C Pou… - Science, 2019 - science.org
INTRODUCTION Blood is the predominant source for molecular analyses in humans, both in
clinical and research settings, and is the target for many therapeutic strategies, emphasizing …

The methyltransferase METTL3 negatively regulates nonalcoholic steatohepatitis (NASH) progression

X Li, B Yuan, M Lu, Y Wang, N Ding, C Liu… - Nature …, 2021 - nature.com
Nonalcoholic steatohepatitis (NASH) is a key step in the progression of nonalcoholic fatty
liver (NAFL) to cirrhosis. However, the molecular mechanisms of the NAFL-to-NASH …

The neXtProt knowledgebase in 2020: data, tools and usability improvements

M Zahn-Zabal, PA Michel, A Gateau… - Nucleic Acids …, 2020 - academic.oup.com
Abstract The neXtProt knowledgebase (https://www. nextprot. org) is an integrative resource
providing both data on human protein and the tools to explore these. In order to provide …

Genotype‐Phenotype Relations for the Parkinson's Disease Genes Parkin, PINK1, DJ1: MDSGene Systematic Review

M Kasten, C Hartmann, J Hampf, S Schaake… - Movement …, 2018 - Wiley Online Library
This first comprehensive MDSGene review is devoted to the 3 autosomal recessive
Parkinson's disease forms: PARK‐Parkin, PARK‐PINK1, and PARK‐DJ1. It followed …

How many human proteoforms are there?

R Aebersold, JN Agar, IJ Amster, MS Baker… - Nature chemical …, 2018 - nature.com
Despite decades of accumulated knowledge about proteins and their post-translational
modifications (PTMs), numerous questions remain regarding their molecular composition …

ProteomicsDB

T Schmidt, P Samaras, M Frejno… - Nucleic acids …, 2018 - academic.oup.com
Abstract ProteomicsDB (https://www. ProteomicsDB. org) is a protein-centric in-memory
database for the exploration of large collections of quantitative mass spectrometry-based …