Cryo-electron microscopy-based drug design

E Cebi, J Lee, VK Subramani, N Bak, C Oh… - Frontiers in Molecular …, 2024 - frontiersin.org
Structure-based drug design (SBDD) has gained popularity owing to its ability to develop
more potent drugs compared to conventional drug-discovery methods. The success of …

Expulsion mechanism of the substrate-translocating subunit in ECF transporters

C Thangaratnarajah, M Nijland… - Nature …, 2023 - nature.com
Abstract Energy-coupling factor (ECF)-type transporters mediate the uptake of micronutrients
in many bacteria. They consist of a substrate-translocating subunit (S-component) and an …

High-resolution cryo-electron microscopy of the human CDK-activating kinase for structure-based drug design

VI Cushing, AF Koh, J Feng, KT Jurgaityte, AK Bahl… - bioRxiv, 2023 - biorxiv.org
Rational design of next-generation therapeutics can be facilitated by high-resolution
structures of drug targets bound to small-molecule inhibitors. However, application of …

Influence of Lipid Conformations on the Interaction Energy between a Membrane and a Peripheral Protein

PE Volynsky, AS Alekseeva, IA Boldyrev - JETP Letters, 2024 - Springer
Peripheral membrane proteins are temporarily coupled to the surface of a membrane,
penetrating into the lipid layer. In this work, it has been shown that the fraction of trans …

Sub-3 Å resolution protein structure determination by single-particle cryo-EM at 100 keV

D Karia, AF Koh, W Yang, VI Cushing, B Basanta… - bioRxiv, 2024 - biorxiv.org
Cryo-electron microscopy (cryo-EM) has revolutionized structural biology by providing high-
resolution insights into biological macromolecules. Here, we present sub-3 Å resolution …

Identification and characterization of a carbohydrate recognition domain-like region in Entamoeba histolytica Gal/GalNAc lectin intermediate subunit

H Zhang, Q Li, H Zhou, M Feng, Y Zhao… - Microbiology …, 2024 - journals.asm.org
Entamoeba histolytica is an enteric protozoan parasite that causes human amebic colitis
and extraintestinal abscesses. As a prerequisite for parasite colonization and invasion …

Влияние липидных конформаций на энергию взаимодействия мембраны и периферического белка

ПЕ Волынский, АС Алексеева… - Письма в Журнал …, 2024 - mathnet.ru
Периферические мембранные белки временно связываются с поверхностью
мембраны, заглубляясь в липидный слой. В этой работе мы показываем, что в зоне …

The import and export of vitamin B12 in bacteria

M Nijland - 2024 - research.rug.nl
In this thesis we mainly focus on membrane transporters that facilitate the transport of
vitamin B12 in bacteria. One of these transporters is the ABC transporters BacA from …

[PDF][PDF] From Prediction to Reality: An Investigation into the Structure and Function of CLN6 in Batten Disease

IJ Green - 2024 - ourarchive.otago.ac.nz
Batten disease or neuronal ceroid lipofuscinoses (NCL) is an inherited lysosomal storage
disorder caused by mutated genes referred to as CLNs (ceroid lipofuscinosis neuronal). One …

[PDF][PDF] Cryo-EM studies of ryanodine receptors: rapid purification and regulation of gating

C Li - 2024 - researchportal.vub.be
Ryanodine receptors (RyR) are intracellular ion channels that regulate Ca2+ flow from the
endoplasmic or sarcoplasmic reticulum (ER or SR) into the cytoplasm 180. Three isoforms of …