[HTML][HTML] Graph neural networks in histopathology: Emerging trends and future directions

S Brussee, G Buzzanca, AMR Schrader, J Kers - Medical Image Analysis, 2025 - Elsevier
Histopathological analysis of whole slide images (WSIs) has seen a surge in the utilization
of deep learning methods, particularly Convolutional Neural Networks (CNNs). However …

HECLIP: Histology-Enhanced Contrastive Learning for Imputation of Transcriptomics Profiles

Q Wang, W Chen, B Li, J Su, G Wang… - arxiv preprint arxiv …, 2025 - arxiv.org
Histopathology, particularly hematoxylin and eosin (H\&E) staining, plays a critical role in
diagnosing and characterizing pathological conditions by highlighting tissue morphology …

PathOmCLIP: Connecting tumor histology with spatial gene expression via locally enhanced contrastive learning of Pathology and Single-cell foundation model

Y Lee, X Liu, M Hao, T Liu, A Regev - bioRxiv, 2024 - biorxiv.org
Tumor morphological features from histology images are a cornerstone of clinical pathology,
diagnostic biomarkers, and basic cancer biology research. Spatial transcriptomics, which …