Lipid A modification systems in gram-negative bacteria

CRH Raetz, CM Reynolds, MS Trent… - Annu. Rev …, 2007 - annualreviews.org
The lipid A moiety of lipopolysaccharide forms the outer monolayer of the outer membrane of
most gram-negative bacteria. Escherichia coli lipid A is synthesized on the cytoplasmic …

Comparative review of Francisella tularensis and Francisella novicida

LC Kingry, JM Petersen - Frontiers in cellular and infection …, 2014 - frontiersin.org
Francisella tularensis is the causative agent of the acute disease tularemia. Due to its
extreme infectivity and ability to cause disease upon inhalation, F. tularensis has been …

Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage

CL Dupont, DB Rusch, S Yooseph… - The ISME …, 2012 - academic.oup.com
Bacteria in the 16S rRNA clade SAR86 are among the most abundant uncultivated
constituents of microbial assemblages in the surface ocean for which little genomic …

Graph clustering via a discrete uncoupling process

S Van Dongen - SIAM Journal on Matrix Analysis and Applications, 2008 - SIAM
A discrete uncoupling process for finite spaces is introduced, called the Markov Cluster
Process or the MCL process. The process is the engine for the graph clustering algorithm …

The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

R Caspi, H Foerster, CA Fulcher, P Kaipa… - Nucleic acids …, 2007 - academic.oup.com
MetaCyc (MetaCyc. org) is a universal database of metabolic pathways and enzymes from
all domains of life. The pathways in MetaCyc are curated from the primary scientific …

Highly sensitive detection of high-risk bacterial pathogens using SERS-based lateral flow assay strips

R Wang, K Kim, N Choi, X Wang, J Lee, JH Jeon… - Sensors and Actuators B …, 2018 - Elsevier
Bacterial pathogens such as Yersinia pestis, Francisella tularensis, and Bacillus anthracis
are classified into the highest rank of potential bioterrorism agents. Colorimetric lateral flow …

Expansion of the BioCyc collection of pathway/genome databases to 160 genomes

PD Karp, CA Ouzounis, C Moore-Kochlacs… - Nucleic acids …, 2005 - academic.oup.com
The BioCyc database collection is a set of 160 pathway/genome databases (PGDBs) for
most eukaryotic and prokaryotic species whose genomes have been completely sequenced …

Molecular Epidemiology, Evolution, and Ecology of Francisella

P Keim, A Johansson… - Annals of the New York …, 2007 - Wiley Online Library
Tularemia is a disease caused by several subspecies of Francisella tularensis, although the
severity of the disease varies greatly from subspecies to subspecies. Currently, there are …

Invited review: diversity of endotoxin and its impact on pathogenesis

MS Trent, CM Stead, AX Tran… - Journal of endotoxin …, 2006 - journals.sagepub.com
Lipopolysaccharide or LPS is localized to the outer leaflet of the outer membrane and serves
as the major surface component of the bacterial cell envelope. This remarkable glycolipid is …

The biology of the PmrA/PmrB two-component system: the major regulator of lipopolysaccharide modifications

HD Chen, EA Groisman - Annual review of microbiology, 2013 - annualreviews.org
The ability of gram-negative bacteria to resist killing by antimicrobial agents and to avoid
detection by host immune systems often entails modification to the lipopolysaccharide (LPS) …